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LOC100797033 probable UDP-arabinopyranose mutase 5 [ Glycine max (soybean) ]

Gene ID: 100797033, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100797033
Gene description
probable UDP-arabinopyranose mutase 5
Locus tag
GLYMA_18G240100v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100797033 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
3
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 18 NC_038254.2 (53159269..53161787, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 18 NC_038254.1 (52884614..52887924, complement)

Chromosome 18 - NC_038254.2Genomic Context describing neighboring genes Neighboring gene protein LUTEIN DEFICIENT 5, chloroplastic Neighboring gene uncharacterized protein At4g13230 Neighboring gene ALBINO3-like protein 2, chloroplastic Neighboring gene uncharacterized LOC100781305

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-arabinopyranose mutase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in UDP-L-arabinose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable UDP-arabinopyranose mutase 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038254.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    53159269..53161787 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006602774.3 → XP_006602837.1  probable UDP-arabinopyranose mutase 5

    See identical proteins and their annotated locations for XP_006602837.1

    UniProtKB/TrEMBL
    A0A0R0F492, K7MUF4
    Conserved Domains (1) summary
    pfam03214
    Location:6 → 344
    RGP; Reversibly glycosylated polypeptide
Nucleotide Protein
Heading Accession and Version

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