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LOC100796956 laccase-5 [ Glycine max (soybean) ]

Gene ID: 100796956, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100796956
Gene description
laccase-5
Locus tag
GLYMA_14G056100v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100796956 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
6
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 14 NC_038250.2 (4368182..4372297)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 14 NC_038250.1 (4452137..4456163)

Chromosome 14 - NC_038250.2Genomic Context describing neighboring genes Neighboring gene probably inactive leucine-rich repeat receptor-like protein kinase IMK2 Neighboring gene sorting nexin 2B Neighboring gene dehydration-responsive element-binding protein 2A2 Neighboring gene abscisic acid receptor PYL4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables copper ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hydroquinone:oxygen oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lignin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in apoplast IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
laccase-5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038250.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    4368182..4372297
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003543997.5 → XP_003544045.1  laccase-5

    UniProtKB/TrEMBL
    I1M7Q3
    Conserved Domains (1) summary
    TIGR03389
    Location:24 → 569
    laccase; plant
Nucleotide Protein
Heading Accession and Version

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