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LOC100794379 probable galacturonosyltransferase 15 [ Glycine max (soybean) ]

Gene ID: 100794379, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100794379
Gene description
probable galacturonosyltransferase 15
Locus tag
GLYMA_02G287600v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100794379 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
6
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 2 NC_016089.4 (48612789..48619876)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 2 NC_016089.3 (46788453..46795582)

Chromosome 2 - NC_016089.4Genomic Context describing neighboring genes Neighboring gene taxadiene 5-alpha hydroxylase Neighboring gene uncharacterized LOC100782197 Neighboring gene protodermal factor 1 Neighboring gene agamous-like MADS-box protein MADS1 Neighboring gene 50S ribosomal protein HLL, mitochondrial-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonate 4-alpha-galacturonosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable galacturonosyltransferase 15

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_016089.4 Reference Glycine_max_v4.0 Primary Assembly

    Range
    48612789..48619876
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003518469.5 → XP_003518517.1  probable galacturonosyltransferase 15 isoform X1

    UniProtKB/TrEMBL
    A0A368UIM2
    Conserved Domains (1) summary
    PLN02867
    Location:1 → 520
    PLN02867; Probable galacturonosyltransferase

  2. XM_041009516.1 → XP_040865450.1  probable galacturonosyltransferase 15 isoform X3

    UniProtKB/TrEMBL
    A0A0R0L9N8
    Conserved Domains (1) summary
    PLN02867
    Location:2 → 417
    PLN02867; Probable galacturonosyltransferase

  3. XM_041009509.1 → XP_040865443.1  probable galacturonosyltransferase 15 isoform X2

    UniProtKB/TrEMBL
    A0A0R0L809
    Conserved Domains (1) summary
    PLN02867
    Location:3 → 445
    PLN02867; Probable galacturonosyltransferase

  4. XM_041009511.1 → XP_040865445.1  probable galacturonosyltransferase 15 isoform X2

    UniProtKB/TrEMBL
    A0A0R0L809
    Conserved Domains (1) summary
    PLN02867
    Location:3 → 445
    PLN02867; Probable galacturonosyltransferase
Nucleotide Protein
Heading Accession and Version

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