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LOC100793193 probable galacturonosyltransferase 6 [ Glycine max (soybean) ]

Gene ID: 100793193, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100793193
Gene description
probable galacturonosyltransferase 6
Locus tag
GLYMA_19G161500v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100793193 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
9
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 19 NC_038255.2 (42657766..42664411, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 19 NC_038255.1 (42215239..42222066, complement)

Chromosome 19 - NC_038255.2Genomic Context describing neighboring genes Neighboring gene F-box/LRR-repeat protein 17 Neighboring gene uncharacterized LOC100306223 Neighboring gene magnesium transporter MRS2-I Neighboring gene E3 ubiquitin protein ligase DRIP2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonate 4-alpha-galacturonosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable galacturonosyltransferase 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038255.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    42657766..42664411 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003553432.5 → XP_003553480.2  probable galacturonosyltransferase 6 isoform X1

    UniProtKB/TrEMBL
    A0A0R0EN86
    Conserved Domains (1) summary
    PLN02718
    Location:1 → 625
    PLN02718; Probable galacturonosyltransferase

  2. XM_006604419.4 → XP_006604482.2  probable galacturonosyltransferase 6 isoform X2

    UniProtKB/TrEMBL
    A0A0R0EYF4
    Conserved Domains (1) summary
    PLN02718
    Location:1 → 623
    PLN02718; Probable galacturonosyltransferase
Nucleotide Protein
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