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LOC100792587 isoamylase 1, chloroplastic [ Glycine max (soybean) ]

Gene ID: 100792587, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100792587
Gene description
isoamylase 1, chloroplastic
Locus tag
GLYMA_08G028400v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100792587 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
18
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 8 NC_038244.2 (2262544..2273115, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 8 NC_038244.1 (2265003..2275685, complement)

Chromosome 8 - NC_038244.2Genomic Context describing neighboring genes Neighboring gene ethanolamine-phosphate cytidylyltransferase Neighboring gene uncharacterized LOC100527340 Neighboring gene auxin-responsive protein SAUR50 Neighboring gene uncharacterized LOC100793652 Neighboring gene phospholipase A2 homolog 3-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
isoamylase 1, chloroplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038244.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    2262544..2273115 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003532407.5 → XP_003532455.2  isoamylase 1, chloroplastic isoform X1

    See identical proteins and their annotated locations for XP_003532455.2

    UniProtKB/TrEMBL
    I1KPR5, I1KPR6
    Conserved Domains (2) summary
    cd02856
    Location:89 → 236
    E_set_GDE_Isoamylase_N; N-terminal Early set domain associated with the catalytic domain of Glycogen debranching enzyme and bacterial isoamylase (also called glycogen 6-glucanohydrolase)
    cd11326
    Location:217 → 673
    AmyAc_Glg_debranch; Alpha amylase catalytic domain found in glycogen debranching enzymes

  2. XM_026129503.2 → XP_025985288.1  isoamylase 1, chloroplastic isoform X2

    UniProtKB/TrEMBL
    A0A0R0IG88, A0A0R0IMP1
    Conserved Domains (2) summary
    cd11326
    Location:63 → 519
    AmyAc_Glg_debranch; Alpha amylase catalytic domain found in glycogen debranching enzymes
    cl28984
    Location:1 → 82
    E_set; Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus
Nucleotide Protein
Heading Accession and Version

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