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LOC100789650 pectinesterase [ Glycine max (soybean) ]

Gene ID: 100789650, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100789650
Gene description
pectinesterase
Locus tag
GLYMA_02G008400v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100789650 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
2
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 2 NC_016089.4 (848363..855394, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 2 NC_016089.3 (848675..855579, complement)

Chromosome 2 - NC_016089.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106795191 Neighboring gene microRNA MIR408a Neighboring gene pectinesterase Neighboring gene pto-interacting protein 1-like Neighboring gene squamosa promoter-binding-like protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pectinesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pectinesterase inhibitor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall modification IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pectinesterase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_016089.4 Reference Glycine_max_v4.0 Primary Assembly

    Range
    848363..855394 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003519688.5 → XP_003519736.1  pectinesterase

    UniProtKB/TrEMBL
    I1JBB5
    Conserved Domains (1) summary
    PLN02745
    Location:31 → 570
    PLN02745; Putative pectinesterase/pectinesterase inhibitor
Nucleotide Protein
Heading Accession and Version

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