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LOC100788448 pectin acetylesterase 10 [ Glycine max (soybean) ]

Gene ID: 100788448, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100788448
Gene description
pectin acetylesterase 10
Locus tag
GLYMA_19G224500v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100788448 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
13
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 19 NC_038255.2 (48188901..48194582)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 19 NC_038255.1 (47664759..47669976)

Chromosome 19 - NC_038255.2Genomic Context describing neighboring genes Neighboring gene germin-like protein Neighboring gene protein NRT1/ PTR FAMILY 4.6 Neighboring gene uncharacterized LOC121174146 Neighboring gene transcription factor MYB61 Neighboring gene transcription factor PIF3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pectin acetylesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plant-type cell wall IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pectin acetylesterase 10

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038255.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    48188901..48194582
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014771787.3 → XP_014627273.1  pectin acetylesterase 10 isoform X2

    Conserved Domains (1) summary
    pfam03283
    Location:55 → 303
    PAE; Pectinacetylesterase

  2. XM_006604713.4 → XP_006604776.1  pectin acetylesterase 10 isoform X1

    See identical proteins and their annotated locations for XP_006604776.1

    UniProtKB/TrEMBL
    I1NBM1
    Conserved Domains (1) summary
    pfam03283
    Location:55 → 401
    PAE; Pectinacetylesterase
Nucleotide Protein
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