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PAL1.2 phenylalanine ammonia-lyase 1 [ Glycine max (soybean) ]

Gene ID: 100788438, updated on 7-Dec-2023

Summary

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Gene symbol
PAL1.2
Gene description
phenylalanine ammonia-lyase 1
Locus tag
GLYMA_03G181700v4
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
Also known as
PAL1; GmPAL1.2
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Genomic context

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See PAL1.2 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
2
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 3 NC_016090.4 (40534935..40538785)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 3 NC_016090.3 (39362733..39366583)

Chromosome 3 - NC_016090.4Genomic Context describing neighboring genes Neighboring gene ethylene-insensitive protein 2 Neighboring gene phenylalanine ammonia-lyase 1 Neighboring gene chromodomain-helicase-DNA-binding protein 8 Neighboring gene adenosine kinase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and structure of a phenylalanine ammonia-lyase gene from Glycine max. Frank RL, et al. DNA Seq, 1991. PMID 1799682
  2. Chalcone synthase mRNA and activity are reduced in yellow soybean seed coats with dominant I alleles. Wang CS, et al. Plant Physiol, 1994 Jun. PMID 8066134, Free PMC Article
  3. Gene expression in the lignin biosynthesis pathway during soybean seed development. Baldoni A, et al. Genet Mol Res, 2013 Feb 28. PMID 23479147
  4. Enzymes of the Phenylpropanoid Pathway in Soybean Infected with Meloidogyne incognita or Heterodera glycines. Edens RM, et al. J Nematol, 1995 Sep. PMID 19277292, Free PMC Article
  5. Induction of phytoalexin synthesis in soybean. Elicitor-induced increase in enzyme activities of flavonoid biosynthesis and incorporation of mevalonate into glyceollin. Zähringer U, et al. Arch Biochem Biophys, 1978 Jun. PMID 567042

See all (26) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phenylalanine ammonia-lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in L-phenylalanine catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phenylalanine ammonia-lyase 1
NP_001343986.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001357057.1 → NP_001343986.1  phenylalanine ammonia-lyase 1

    Status: VALIDATED

    Source sequence(s)
    AK245610
    UniProtKB/Swiss-Prot
    P27991
    UniProtKB/TrEMBL
    I1JPN0
    Conserved Domains (1) summary
    PLN02457
    Location:9 → 713
    PLN02457; phenylalanine ammonia-lyase

RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_016090.4 Reference Glycine_max_v4.0 Primary Assembly

    Range
    40534935..40538785
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P27991.1 GenPept UniProtKB/Swiss-Prot:P27991

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases
Research Materials