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LOC100787734 alpha-L-arabinofuranosidase 1 [ Glycine max (soybean) ]

Gene ID: 100787734, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100787734
Gene description
alpha-L-arabinofuranosidase 1
Locus tag
GLYMA_19G124600v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100787734 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
17
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 19 NC_038255.2 (38721921..38728288)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 19 NC_038255.1 (38280161..38286502)

Chromosome 19 - NC_038255.2Genomic Context describing neighboring genes Neighboring gene microRNA MIR4995 Neighboring gene alpha-L-arabinofuranosidase 1 Neighboring gene alpha-L-arabinofuranosidase 1-like Neighboring gene E3 ubiquitin-protein ligase At4g11680

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-L-arabinofuranosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in L-arabinose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-L-arabinofuranosidase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038255.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    38721921..38728288
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003554041.5 → XP_003554089.1  alpha-L-arabinofuranosidase 1

    UniProtKB/TrEMBL
    I1N8L7
    Conserved Domains (1) summary
    smart00813
    Location:452 → 638
    Alpha-L-AF_C; Alpha-L-arabinofuranosidase C-terminus
Nucleotide Protein
Heading Accession and Version

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