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LOC100785784 probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [ Glycine max (soybean) ]

Gene ID: 100785784, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100785784
Gene description
probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY
Locus tag
GLYMA_03G198100v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100785784 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
18
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 3 NC_016090.4 (41914069..41927748)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 3 NC_016090.3 (40745841..40759524)

Chromosome 3 - NC_016090.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106796104 Neighboring gene vacuolar protein sorting-associated protein 55 homolog Neighboring gene mitochondrial fission protein ELM1 Neighboring gene peptidyl-prolyl cis-trans isomerase CYP13 Neighboring gene mRNA-decapping enzyme-like protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_016090.4 Reference Glycine_max_v4.0 Primary Assembly

    Range
    41914069..41927748
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006577022.4 → XP_006577085.1  probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY

    See identical proteins and their annotated locations for XP_006577085.1

    UniProtKB/TrEMBL
    K7KG28
    Conserved Domains (3) summary
    COG3914
    Location:199 → 841
    Spy; Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
    sd00006
    Location:326 → 354
    TPR; TPR repeat [structural motif]
    NF033758
    Location:18 → 350
    gliding_GltE; adventurous gliding motility TPR repeat lipoprotein GltE

  2. XM_003521428.4 → XP_003521476.1  probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY

    See identical proteins and their annotated locations for XP_003521476.1

    UniProtKB/TrEMBL
    K7KG28
    Conserved Domains (3) summary
    COG3914
    Location:199 → 841
    Spy; Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
    sd00006
    Location:326 → 354
    TPR; TPR repeat [structural motif]
    NF033758
    Location:18 → 350
    gliding_GltE; adventurous gliding motility TPR repeat lipoprotein GltE
Nucleotide Protein
Heading Accession and Version

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Other Literature Sources
Molecular Biology Databases