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LOC100785701 polygalacturonase [ Glycine max (soybean) ]

Gene ID: 100785701, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100785701
Gene description
polygalacturonase
Locus tag
GLYMA_15G127500v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100785701 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
4
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 15 NC_038251.2 (10065337..10071377)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 15 NC_038251.1 (10122849..10128876)

Chromosome 15 - NC_038251.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100799098 Neighboring gene cysteine desulfurase 1, chloroplastic Neighboring gene tubulin-folding cofactor E-like Neighboring gene protein ROOT HAIR DEFECTIVE 3 homolog 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polygalacturonase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038251.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    10065337..10071377
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003547268.5 → XP_003547316.1  polygalacturonase

    See identical proteins and their annotated locations for XP_003547316.1

    UniProtKB/TrEMBL
    A0A0R0I8P2, I1MG08
    Conserved Domains (1) summary
    cl19188
    Location:24 → 408
    PL-6; Polysaccharide Lyase Family 6
Nucleotide Protein
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