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LOC100785005 probable polygalacturonase-like [ Glycine max (soybean) ]

Gene ID: 100785005, updated on 7-Dec-2023

Summary

Gene symbol
LOC100785005
Gene description
probable polygalacturonase-like
Locus tag
GLYMA_16G179000v4
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

See LOC100785005 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
6
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 16 NC_038252.2 (34179800..34183000, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 16 NC_038252.1 (33962755..33965955, complement)

Chromosome 16 - NC_038252.2Genomic Context describing neighboring genes Neighboring gene heat shock protein 90-A2 Neighboring gene glutaminyl-peptide cyclotransferase Neighboring gene beta-carotene hydroxylase BCH2 Neighboring gene putative septum site-determining protein minD homolog, chloroplastic

Genomic regions, transcripts, and products

General protein information

Preferred Names
probable polygalacturonase-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001253286.2NP_001240215.1  probable polygalacturonase-like precursor

    See identical proteins and their annotated locations for NP_001240215.1

    Status: PROVISIONAL

    Source sequence(s)
    BT093616
    UniProtKB/TrEMBL
    C6T824, I1L319
    Conserved Domains (1) summary
    COG5434
    Location:53355
    Pgu1; Polygalacturonase [Carbohydrate transport and metabolism]

RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038252.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    34179800..34183000 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)