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LOC100784013 mannan endo-1,4-beta-mannosidase 7 [ Glycine max (soybean) ]

Gene ID: 100784013, updated on 19-Jun-2024

Summary

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Gene symbol
LOC100784013
Gene description
mannan endo-1,4-beta-mannosidase 7
Locus tag
GLYMA_11G071300v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100784013 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
5
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 11 NC_038247.2 (5313366..5316188)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 11 NC_038247.1 (5321136..5323959)

Chromosome 11 - NC_038247.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100783478 Neighboring gene uncharacterized LOC100795852 Neighboring gene lipid phosphate phosphatase epsilon 2, chloroplastic Neighboring gene heavy metal-associated isoprenylated plant protein 35

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mannan endo-1,4-beta-mannosidase 7

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038247.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    5313366..5316188
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003537554.5 → XP_003537602.1  mannan endo-1,4-beta-mannosidase 7 isoform X1

    See identical proteins and their annotated locations for XP_003537602.1

    UniProtKB/TrEMBL
    C6TAY0, I1LHV7
    Conserved Domains (1) summary
    COG3934
    Location:71 → 375
    COG3934; Endo-1,4-beta-mannosidase [Carbohydrate transport and metabolism]

  2. XM_006590633.4 → XP_006590696.1  mannan endo-1,4-beta-mannosidase 7 isoform X2

    UniProtKB/TrEMBL
    C6TAY0
    Conserved Domains (1) summary
    COG3934
    Location:71 → 373
    COG3934; Endo-1,4-beta-mannosidase [Carbohydrate transport and metabolism]

  3. XM_006590634.4 → XP_006590697.1  mannan endo-1,4-beta-mannosidase 7 isoform X3

    Conserved Domains (1) summary
    COG3934
    Location:37 → 308
    COG3934; Endo-1,4-beta-mannosidase [Carbohydrate transport and metabolism]

  4. XM_041006621.1 → XP_040862555.1  mannan endo-1,4-beta-mannosidase 7 isoform X4

    Conserved Domains (1) summary
    COG3934
    Location:37 → 306
    COG3934; Endo-1,4-beta-mannosidase [Carbohydrate transport and metabolism]
Nucleotide Protein
Heading Accession and Version

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