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LOC100783162 cellulose synthase A catalytic subunit 3 [UDP-forming] [ Glycine max (soybean) ]

Gene ID: 100783162, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100783162
Gene description
cellulose synthase A catalytic subunit 3 [UDP-forming]
Locus tag
GLYMA_12G237000v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100783162 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
15
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 12 NC_038248.2 (41026961..41034706)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 12 NC_038248.1 (39586941..39594714)

Chromosome 12 - NC_038248.2Genomic Context describing neighboring genes Neighboring gene nuclear transcription factor Y subunit A-11 Neighboring gene protein FRA10AC1-like Neighboring gene uncharacterized LOC100783695 Neighboring gene zinc finger CCCH domain-containing protein 30

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cellulose synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellulose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type primary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cellulose synthase A catalytic subunit 3 [UDP-forming]

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038248.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    41026961..41034706
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003540479.5 → XP_003540527.1  cellulose synthase A catalytic subunit 3 [UDP-forming]

    UniProtKB/TrEMBL
    I1LVD2
    Conserved Domains (1) summary
    PLN02638
    Location:1 → 1079
    PLN02638; cellulose synthase A (UDP-forming), catalytic subunit
Nucleotide Protein
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