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LOC100782892 pectinesterase 2 [ Glycine max (soybean) ]

Gene ID: 100782892, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100782892
Gene description
pectinesterase 2
Locus tag
GLYMA_01G137700v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100782892 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
2
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 1 NC_016088.4 (47539983..47544390, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 1 NC_016088.3 (46434055..46438249, complement)

Chromosome 1 - NC_016088.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100808686 Neighboring gene plasmodesmata-located protein 8 Neighboring gene uncharacterized LOC100810295 Neighboring gene pectinesterase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pectinesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pectinesterase inhibitor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall modification IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pectinesterase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_016088.4 Reference Glycine_max_v4.0 Primary Assembly

    Range
    47539983..47544390 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003516980.5 → XP_003517028.1  pectinesterase 2

    UniProtKB/TrEMBL
    I1J7T0
    Conserved Domains (2) summary
    cd15798
    Location:32 → 173
    PMEI-like_3; Uncharacterized subfamily of plant invertase/pectin methylesterase inhibitor domains
    pfam01095
    Location:209 → 501
    Pectinesterase
Nucleotide Protein
Heading Accession and Version

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