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LOC100782799 alpha,alpha-trehalose-phosphate synthase [UDP-forming] 5 [ Glycine max (soybean) ]

Gene ID: 100782799, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100782799
Gene description
alpha,alpha-trehalose-phosphate synthase [UDP-forming] 5
Locus tag
GLYMA_20G120300v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100782799 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
4
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 20 NC_038256.2 (36290284..36295120)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 20 NC_038256.1 (36306885..36311643)

Chromosome 20 - NC_038256.2Genomic Context describing neighboring genes Neighboring gene LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.1 Neighboring gene LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 Neighboring gene uncharacterized LOC121174286 Neighboring gene uncharacterized LOC121174287 Neighboring gene putative nucleotidyl transferase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in trehalose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in trehalose metabolism in response to stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha,alpha-trehalose-phosphate synthase [UDP-forming] 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038256.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    36290284..36295120
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041013254.1 → XP_040869188.1  alpha,alpha-trehalose-phosphate synthase [UDP-forming] 5

    UniProtKB/TrEMBL
    I1NFN9
    Conserved Domains (1) summary
    PLN02205
    Location:1 → 842
    PLN02205; alpha,alpha-trehalose-phosphate synthase [UDP-forming]

  2. XM_006605873.4 → XP_006605936.1  alpha,alpha-trehalose-phosphate synthase [UDP-forming] 5

    See identical proteins and their annotated locations for XP_006605936.1

    UniProtKB/TrEMBL
    I1NFN9
    Conserved Domains (1) summary
    PLN02205
    Location:1 → 842
    PLN02205; alpha,alpha-trehalose-phosphate synthase [UDP-forming]

  3. XM_041013253.1 → XP_040869187.1  alpha,alpha-trehalose-phosphate synthase [UDP-forming] 5

    UniProtKB/TrEMBL
    I1NFN9
    Conserved Domains (1) summary
    PLN02205
    Location:1 → 842
    PLN02205; alpha,alpha-trehalose-phosphate synthase [UDP-forming]

  4. XM_006605870.4 → XP_006605933.1  alpha,alpha-trehalose-phosphate synthase [UDP-forming] 5

    See identical proteins and their annotated locations for XP_006605933.1

    UniProtKB/TrEMBL
    I1NFN9
    Conserved Domains (1) summary
    PLN02205
    Location:1 → 842
    PLN02205; alpha,alpha-trehalose-phosphate synthase [UDP-forming]

  5. XM_006605871.4 → XP_006605934.1  alpha,alpha-trehalose-phosphate synthase [UDP-forming] 5

    See identical proteins and their annotated locations for XP_006605934.1

    UniProtKB/TrEMBL
    I1NFN9
    Conserved Domains (1) summary
    PLN02205
    Location:1 → 842
    PLN02205; alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Nucleotide Protein
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