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LOC100782548 beta-1,3-galactosyltransferase GALT1 [ Glycine max (soybean) ]

Gene ID: 100782548, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100782548
Gene description
beta-1,3-galactosyltransferase GALT1
Locus tag
GLYMA_02G108100v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100782548 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
8
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 2 NC_016089.4 (10294143..10299855)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 2 NC_016089.3 (10325948..10331583)

Chromosome 2 - NC_016089.4Genomic Context describing neighboring genes Neighboring gene ribonuclease 1 Neighboring gene putative ribonuclease T2 Neighboring gene 50S ribosomal protein L18 Neighboring gene (R)-mandelonitrile lyase-like Neighboring gene E3 ubiquitin-protein ligase MPSR1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-galactose:N-glycan beta-1,3-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,3-galactosyltransferase GALT1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_016089.4 Reference Glycine_max_v4.0 Primary Assembly

    Range
    10294143..10299855
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003518685.5 → XP_003518733.2  beta-1,3-galactosyltransferase GALT1

    UniProtKB/TrEMBL
    I1JE51
    Conserved Domains (1) summary
    PLN03133
    Location:15 → 650
    PLN03133; beta-1,3-galactosyltransferase; Provisional
Nucleotide Protein
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