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LOC100780527 callose synthase 2 [ Glycine max (soybean) ]

Gene ID: 100780527, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100780527
Gene description
callose synthase 2
Locus tag
GLYMA_08G157400v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100780527 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
47
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 8 NC_038244.2 (12244152..12274772, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 8 NC_038244.1 (12163403..12193573, complement)

Chromosome 8 - NC_038244.2Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase RMA1 Neighboring gene uncharacterized LOC100781082 Neighboring gene DAR GTPase 2, mitochondrial Neighboring gene uncharacterized LOC100306614

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,3-beta-D-glucan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in (1->3)-beta-D-glucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of 1,3-beta-D-glucan synthase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
callose synthase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038244.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    12244152..12274772 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006585300.4 → XP_006585363.1  callose synthase 2 isoform X1

    See identical proteins and their annotated locations for XP_006585363.1

    UniProtKB/TrEMBL
    A0A0R0ISM0
    Conserved Domains (3) summary
    pfam02364
    Location:1049 → 1802
    Glucan_synthase; 1,3-beta-glucan synthase component
    pfam04652
    Location:47 → 170
    Vta1; Vta1 like
    pfam14288
    Location:316 → 429
    FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1

  2. XM_041018203.1 → XP_040874137.1  callose synthase 2 isoform X2

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases