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LOC100780045 conserved oligomeric Golgi complex subunit 5 [ Glycine max (soybean) ]

Gene ID: 100780045, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100780045
Gene description
conserved oligomeric Golgi complex subunit 5
Locus tag
GLYMA_02G286300v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100780045 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
4
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 2 NC_016089.4 (48533609..48539061)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 2 NC_016089.3 (46709269..46714597)

Chromosome 2 - NC_016089.4Genomic Context describing neighboring genes Neighboring gene probable receptor-like protein kinase At2g42960 Neighboring gene cellulose synthase-like protein D4 Neighboring gene uncharacterized LOC100790698 Neighboring gene glycerol-3-phosphate acyltransferase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in intra-Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Golgi transport complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
conserved oligomeric Golgi complex subunit 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_016089.4 Reference Glycine_max_v4.0 Primary Assembly

    Range
    48533609..48539061
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003519501.5 → XP_003519549.1  conserved oligomeric Golgi complex subunit 5

    UniProtKB/TrEMBL
    I1JJ41, I1M6Y6
    Conserved Domains (1) summary
    pfam10392
    Location:77 → 175
    COG5; Golgi transport complex subunit 5

RNA

  1. XR_413344.4 RNA Sequence

  2. XR_005888543.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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