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LOC100779940 probable pectate lyase 22-like [ Glycine max (soybean) ]

Gene ID: 100779940, updated on 10-Oct-2024

Summary

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Gene symbol
LOC100779940
Gene description
probable pectate lyase 22-like
Locus tag
GLYMA_05G044000v4
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100779940 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
4
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 5 NC_038241.2 (4045346..4047478, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 5 NC_038241.1 (3923884..3926016, complement)

Chromosome 5 - NC_038241.2Genomic Context describing neighboring genes Neighboring gene autophagy-related protein 16 Neighboring gene BTB/POZ and TAZ domain-containing protein 1 Neighboring gene protein STICHEL-like 2 Neighboring gene MA3 DOMAIN-CONTAINING TRANSLATION REGULATORY FACTOR 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pectate lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable pectate lyase 22-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001255614.2 → NP_001242543.2  probable pectate lyase 22-like precursor

    Status: VALIDATED

    Source sequence(s)
    BE473571, BE659641, BI471247, BQ611581, BT097066
    UniProtKB/TrEMBL
    I1K070

RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038241.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    4045346..4047478 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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