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LOC100778301 UDP-arabinopyranose mutase 3 [ Glycine max (soybean) ]

Gene ID: 100778301, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100778301
Gene description
UDP-arabinopyranose mutase 3
Locus tag
GLYMA_04G159700v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100778301 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
4
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 4 NC_016091.4 (38425216..38428182, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 4 NC_016091.3 (39586943..39589913, complement)

Chromosome 4 - NC_016091.4Genomic Context describing neighboring genes Neighboring gene squamosa promoter-binding-like protein 16 Neighboring gene transfer RNA aspartic acid (anticodon GUC) Neighboring gene uncharacterized LOC121174700 Neighboring gene uncharacterized LOC113001452

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-arabinopyranose mutase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in UDP-L-arabinose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UDP-arabinopyranose mutase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_016091.4 Reference Glycine_max_v4.0 Primary Assembly

    Range
    38425216..38428182 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003522231.5 → XP_003522279.1  UDP-arabinopyranose mutase 3

    See identical proteins and their annotated locations for XP_003522279.1

    UniProtKB/TrEMBL
    I1JWM3
    Conserved Domains (1) summary
    PLN03180
    Location:13 → 349
    PLN03180; reversibly glycosylated polypeptide; Provisional
Nucleotide Protein
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