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LOC100778185 probable xyloglucan endotransglucosylase/hydrolase protein 28 [ Glycine max (soybean) ]

Gene ID: 100778185, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100778185
Gene description
probable xyloglucan endotransglucosylase/hydrolase protein 28
Locus tag
GLYMA_07G174800v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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Location:
chromosome: 7
Exon count:
5
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 7 NC_038243.2 (31719670..31723439)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 7 NC_038243.1 (31522247..31526013)

Chromosome 7 - NC_038243.2Genomic Context describing neighboring genes Neighboring gene probable transmembrane ascorbate ferrireductase 3 Neighboring gene small nucleolar RNA R71 Neighboring gene uncharacterized LOC102662944 Neighboring gene uncharacterized LOC102663037

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables xyloglucan:xyloglucosyl transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in xyloglucan metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in apoplast IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cell wall IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable xyloglucan endotransglucosylase/hydrolase protein 28

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038243.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    31719670..31723439
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006583691.3 → XP_006583754.1  probable xyloglucan endotransglucosylase/hydrolase protein 28

    See identical proteins and their annotated locations for XP_006583754.1

    UniProtKB/TrEMBL
    I1KKZ1
    Conserved Domains (1) summary
    cd02176
    Location:33 → 293
    GH16_XET; Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16

  2. XM_006583692.3 → XP_006583755.1  probable xyloglucan endotransglucosylase/hydrolase protein 28

    See identical proteins and their annotated locations for XP_006583755.1

    UniProtKB/TrEMBL
    I1KKZ1
    Conserved Domains (1) summary
    cd02176
    Location:33 → 293
    GH16_XET; Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16

  3. XM_003529187.5 → XP_003529235.1  probable xyloglucan endotransglucosylase/hydrolase protein 28

    See identical proteins and their annotated locations for XP_003529235.1

    UniProtKB/TrEMBL
    I1KKZ1
    Conserved Domains (1) summary
    cd02176
    Location:33 → 293
    GH16_XET; Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16
Nucleotide Protein
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