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LOC100777749 beta-1,4-xylosyltransferase IRX9 [ Glycine max (soybean) ]

Gene ID: 100777749, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100777749
Gene description
beta-1,4-xylosyltransferase IRX9
Locus tag
GLYMA_03G178300v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100777749 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
3
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 3 NC_016090.4 (40263386..40267067, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 3 NC_016090.3 (39091021..39094825, complement)

Chromosome 3 - NC_016090.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121174604 Neighboring gene protein IQ-DOMAIN 7 Neighboring gene pentatricopeptide repeat-containing protein At3g53360, mitochondrial Neighboring gene DEAD-box ATP-dependent RNA helicase 57-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glucuronoxylan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type secondary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,4-xylosyltransferase IRX9
Names
probable beta-1,4-xylosyltransferase IRX9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_016090.4 Reference Glycine_max_v4.0 Primary Assembly

    Range
    40263386..40267067 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014773862.3 → XP_014629348.1  beta-1,4-xylosyltransferase IRX9

    UniProtKB/TrEMBL
    A0A0R0KLA4, I1JPJ7
    Conserved Domains (1) summary
    cl11394
    Location:1 → 341
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  2. XM_003521330.5 → XP_003521378.1  beta-1,4-xylosyltransferase IRX9

    UniProtKB/TrEMBL
    A0A0R0KLA4, I1JPJ7
    Conserved Domains (1) summary
    cl11394
    Location:1 → 341
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases