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LOC100777505 beta-1,4-xylosyltransferase IRX14 [ Glycine max (soybean) ]

Gene ID: 100777505, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100777505
Gene description
beta-1,4-xylosyltransferase IRX14
Locus tag
GLYMA_16G095800v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100777505 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
4
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 16 NC_038252.2 (17589077..17594726)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 16 NC_038252.1 (17512830..17518480)

Chromosome 16 - NC_038252.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112999780 Neighboring gene transcription factor MYB61-like Neighboring gene cysteine proteinase COT44 Neighboring gene membrane-bound transcription factor site-2 protease homolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glucuronoxylan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type secondary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,4-xylosyltransferase IRX14
Names
probable beta-1,4-xylosyltransferase IRX14

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038252.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    17589077..17594726
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003547768.5 → XP_003547816.1  beta-1,4-xylosyltransferase IRX14 isoform X1

    UniProtKB/TrEMBL
    I1MMG1
    Conserved Domains (1) summary
    pfam03360
    Location:178 → 416
    Glyco_transf_43; Glycosyltransferase family 43

  2. XM_041010300.1 → XP_040866234.1  beta-1,4-xylosyltransferase IRX14 isoform X2

    Conserved Domains (1) summary
    cl11394
    Location:157 → 417
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
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