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RJ1 LysM-type receptor kinase NFR1alpha [ Glycine max (soybean) ]

Gene ID: 100776847, updated on 7-Dec-2023

Summary

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Gene symbol
RJ1
Gene description
LysM-type receptor kinase NFR1alpha
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
Also known as
NFR1A
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Genomic context

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See RJ1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
12
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 2 NC_016089.4 (47299657..47305180)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 2 NC_016089.3 (45475489..45480861)

Chromosome 2 - NC_016089.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100305920 Neighboring gene lysM domain receptor-like kinase 3 Neighboring gene UPF0481 protein At3g47200 Neighboring gene uncharacterized LOC100777384

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Glycine max non-nodulation locus rj1: a recombinogenic region encompassing a SNP in a lysine motif receptor-like kinase (GmNFR1α). Lee WK, et al. Theor Appl Genet, 2011 Mar. PMID 21104396
  2. Nodulation factor receptor kinase 1α controls nodule organ number in soybean (Glycine max L. Merr). Indrasumunar A, et al. Plant J, 2011 Jan. PMID 21175888
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transmembrane receptor protein kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in innate immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lysM domain receptor-like kinase 3
Names
Nod-factor receptor 1A
chitin elicitor receptor kinase 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_016089.4 Reference Glycine_max_v4.0 Primary Assembly

    Range
    47299657..47305180
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014770171.2 → XP_014625657.2  lysM domain receptor-like kinase 3 isoform X1

    UniProtKB/TrEMBL
    D8KWQ2, I1JIL9
    Conserved Domains (1) summary
    cl21453
    Location:323 → 584
    PKc_like; Protein Kinases, catalytic domain

  2. XM_006575525.3 → XP_006575588.2  lysM domain receptor-like kinase 3 isoform X2

    UniProtKB/TrEMBL
    D8KWQ2, I1JIL9
    Conserved Domains (1) summary
    cl21453
    Location:321 → 582
    PKc_like; Protein Kinases, catalytic domain
Nucleotide Protein
Heading Accession and Version

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