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SPY1 probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY-like [ Glycine max (soybean) ]

Gene ID: 100776844, updated on 7-Dec-2023

Summary

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Gene symbol
SPY1
Gene description
probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY-like
Locus tag
GLYMA_02G201300v4
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See SPY1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
18
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 2 NC_016089.4 (40336634..40353953, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 2 NC_016089.3 (38506505..38523451, complement)

Chromosome 2 - NC_016089.4Genomic Context describing neighboring genes Neighboring gene casparian strip membrane protein 2 Neighboring gene casparian strip membrane protein 2-like Neighboring gene sorting nexin 1 Neighboring gene uncharacterized LOC100500228

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY-like
Names
putative UDP-N-acetylglucosamin

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001280583.1 → NP_001267512.1  probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY-like

    See identical proteins and their annotated locations for NP_001267512.1

    Status: PROVISIONAL

    Source sequence(s)
    JN714554
    UniProtKB/TrEMBL
    I1JGL8
    Conserved Domains (3) summary
    COG0457
    Location:175 → 442
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    COG3914
    Location:315 → 847
    Spy; Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
    sd00006
    Location:332 → 360
    TPR; TPR repeat [structural motif]

RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_016089.4 Reference Glycine_max_v4.0 Primary Assembly

    Range
    40336634..40353953 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006574322.4 → XP_006574385.1  probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY-like isoform X1

    See identical proteins and their annotated locations for XP_006574385.1

    UniProtKB/TrEMBL
    I1JGL8
    Conserved Domains (3) summary
    COG0457
    Location:175 → 442
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    COG3914
    Location:315 → 847
    Spy; Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
    sd00006
    Location:332 → 360
    TPR; TPR repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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