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LOC100776412 pectinesterase [ Glycine max (soybean) ]

Gene ID: 100776412, updated on 7-Dec-2023

Summary

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Gene symbol
LOC100776412
Gene description
pectinesterase
Locus tag
GLYMA_06G319000v4
Gene type
protein coding
RefSeq status
MODEL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC100776412 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
3
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 6 NC_038242.2 (50301269..50305186, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 6 NC_038242.1 (50770826..50774776, complement)

Chromosome 6 - NC_038242.2Genomic Context describing neighboring genes Neighboring gene monocopper oxidase-like protein SKS1 Neighboring gene NAC domain-containing protein 7 Neighboring gene probable pectinesterase/pectinesterase inhibitor 60 Neighboring gene uncharacterized LOC121175093 Neighboring gene pectinesterase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pectinesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pectinesterase inhibitor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall modification IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pectinesterase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038242.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    50301269..50305186 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003526330.4 → XP_003526378.1  pectinesterase

    UniProtKB/TrEMBL
    I1KFS6
    Conserved Domains (2) summary
    PLN02301
    Location:95 → 526
    PLN02301; pectinesterase/pectinesterase inhibitor
    cl04375
    Location:1 → 177
    PMEI_like; pectin methylesterase inhibitor and related proteins
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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