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Afg2b AFG2 AAA ATPase homolog B [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 100773232, updated on 8-Mar-2024

Summary

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Gene symbol
Afg2b
Gene description
AFG2 AAA ATPase homolog B
See related
Ensembl:ENSCGRG00015018493
Gene type
protein coding
RefSeq status
MODEL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Also known as
Spata5l1
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See Afg2b in Genome Data Viewer
Location:
chromosome: 6
Exon count:
8
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003614086.1 (1015494..1027951, complement)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) 6 NC_048599.1 (55892600..55906053, complement)

NW_003614086.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 30 member 4 Neighboring gene chromosome unknown C15orf48 homolog Neighboring gene microRNA mir-147 Neighboring gene serine/threonine-protein phosphatase 2A catalytic subunit Neighboring gene glycine amidinotransferase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Becker J, et al. J Biotechnol, 2011 Dec 10. PMID 21945585

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: spermatogenesis-associated protein 5-like protein 1; spermatogenesis-associated protein 5-like protein 1
Names
Spermatogenesis-associated protein 5-like protein 1
spermatogenesis associated 5 like 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003614086.1 Reference CriGri_1.0 Primary Assembly

    Range
    1015494..1027951 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027438227.2 → XP_027294028.2  spermatogenesis-associated protein 5-like protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C2MWX3
    Conserved Domains (1) summary
    TIGR01243
    Location:46 → 661
    CDC48; AAA family ATPase, CDC48 subfamily

Alternate CriGri-PICRH-1.0

Genomic

  1. NC_048599.1 Alternate CriGri-PICRH-1.0

    Range
    55892600..55906053 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027421986.2 → XP_027277787.1  LOW QUALITY PROTEIN: spermatogenesis-associated protein 5-like protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C2MWX3, A0A9J7G5W9
    Related
    ENSCGRP00015024293.2, ENSCGRT00015029805.2
Nucleotide Protein Strain
Heading Accession and Version

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