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St3gal6 ST3 beta-galactoside alpha-2,3-sialyltransferase 6 [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 100771326, updated on 8-Mar-2024

Summary

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Gene symbol
St3gal6
Gene description
ST3 beta-galactoside alpha-2,3-sialyltransferase 6
Locus tag
I79_018123
See related
Ensembl:ENSCGRG00015006627
Gene type
protein coding
RefSeq status
MODEL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See St3gal6 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
12
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003614792.1 (384320..438967)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) 4 NC_048597.1 (33841856..33896507)

NW_003614792.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC118238800 Neighboring gene cytochrome b-c1 complex subunit 7-like Neighboring gene discoidin, CUB and LCCL domain containing 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-galactoside alpha-2,3-sialyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
type 2 lactosamine alpha-2,3-sialyltransferase
Names
Type 2 lactosamine alpha-2,3-sialyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003614792.1 Reference CriGri_1.0 Primary Assembly

    Range
    384320..438967
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003509891.5 → XP_003509939.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X1

    See identical proteins and their annotated locations for XP_003509939.1

    UniProtKB/TrEMBL
    A0A9J7JP86, G3I3V5
    Conserved Domains (1) summary
    pfam00777
    Location:138 → 358
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

Alternate CriGri-PICRH-1.0

Genomic

  1. NC_048597.1 Alternate CriGri-PICRH-1.0

    Range
    33841856..33896507
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027412458.2 → XP_027268259.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X1

    UniProtKB/TrEMBL
    A0A9J7JP86, G3I3V5
    Related
    ENSCGRP00015039564.1, ENSCGRT00015073450.1

  2. XM_027412460.2 → XP_027268261.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X1

    UniProtKB/TrEMBL
    A0A9J7JP86, G3I3V5
    Related
    ENSCGRP00015045392.1, ENSCGRT00015075555.1

  3. XM_027412459.2 → XP_027268260.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X1

    UniProtKB/TrEMBL
    A0A9J7JP86, G3I3V5

  4. XM_027412461.2 → XP_027268262.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X1

    UniProtKB/TrEMBL
    A0A9J7JP86, G3I3V5

  5. XM_027412462.2 → XP_027268263.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X2

    UniProtKB/TrEMBL
    A0A9J7FYL0, G3I3V5
Nucleotide Protein Strain
Heading Accession and Version

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