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Lman2l lectin, mannose binding 2 like [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 100769742, updated on 19-Jun-2024

Summary

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Gene symbol
Lman2l
Gene description
lectin, mannose binding 2 like
Locus tag
I79_004097
See related
Ensembl:ENSCGRG00015015290
Gene type
protein coding
RefSeq status
MODEL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Orthologs
human mouse all
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Genomic context

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See Lman2l in Genome Data Viewer
Location:
chromosome: 1
Exon count:
8
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003613687.1 (1063302..1085265)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) 1 Unlocalized Scaffold NW_023276807.1 (11752044..11774017)

NW_003613687.1Genomic Context describing neighboring genes Neighboring gene cyclin and CBS domain divalent metal cation transport mediator 4 Neighboring gene transcription initiation factor IIA subunit 2-like Neighboring gene fer-1 like family member 5 Neighboring gene KAT8 regulatory NSL complex subunit 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Becker J, et al. J Biotechnol, 2011 Dec 10. PMID 21945585
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables D-mannose binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Golgi organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in COPII-coated ER to Golgi transport vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum-Golgi intermediate compartment IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
VIP36-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003613687.1 Reference CriGri_1.0 Primary Assembly

    Range
    1063302..1085265
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003498296.4 → XP_003498344.1  VIP36-like protein isoform X1

    See identical proteins and their annotated locations for XP_003498344.1

    UniProtKB/TrEMBL
    A0A8C2MZZ9, A0A8C2QPB3
    Conserved Domains (1) summary
    cl14058
    Location:49 → 297
    lectin_L-type; legume lectins

  2. XM_035446147.1 → XP_035302038.1  VIP36-like protein isoform X2

    UniProtKB/TrEMBL
    A0A9J7KEF7
    Conserved Domains (1) summary
    cl14058
    Location:24 → 153
    lectin_L-type; legume lectins

Alternate CriGri-PICRH-1.0

Genomic

  1. NW_023276807.1 Alternate CriGri-PICRH-1.0

    Range
    11752044..11774017
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027386874.2 → XP_027242675.1  VIP36-like protein isoform X1

    UniProtKB/TrEMBL
    A0A8C2MZZ9, A0A8C2QPB3
    Related
    ENSCGRP00015056795.1, ENSCGRT00015080643.1

  2. XM_035452887.1 → XP_035308778.1  VIP36-like protein isoform X2

    UniProtKB/TrEMBL
    A0A9J7KEF7
    Related
    ENSCGRP00015054851.1, ENSCGRT00015082872.1
    Conserved Domains (1) summary
    cl14058
    Location:24 → 153
    lectin_L-type; legume lectins
Nucleotide Protein Strain
Heading Accession and Version

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