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Atp5f1b ATP synthase F1 subunit beta [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 100763024, updated on 18-Sep-2024

Summary

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Gene symbol
Atp5f1b
Gene description
ATP synthase F1 subunit beta
See related
Ensembl:ENSCGRG00015028361
Gene type
protein coding
RefSeq status
MODEL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Also known as
Atp5b
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See Atp5f1b in Genome Data Viewer
Location:
chromosome: 1
Exon count:
10
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003614217.1 (171632..178825)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) 1 Unlocalized Scaffold NW_023276806.1 (129779781..129787080, complement)

NW_003614217.1Genomic Context describing neighboring genes Neighboring gene nascent polypeptide-associated complex subunit alpha Neighboring gene nascent polypeptide-associated complex subunit alpha, muscle-specific form-like Neighboring gene prostaglandin E synthase 3 Neighboring gene small nucleolar RNA SNORD59 Neighboring gene small nucleolar RNA SNORD59 Neighboring gene bromodomain adjacent to zinc finger domain 2A Neighboring gene RNA binding motif single stranded interacting protein 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Becker J, et al. J Biotechnol, 2011 Dec 10. PMID 21945585
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables proton-transporting ATP synthase activity, rotational mechanism IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proton motive force-driven mitochondrial ATP synthesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proton transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of proton-transporting ATP synthase complex, catalytic core F(1) IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ATP synthase subunit beta, mitochondrial
Names
ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003614217.1 Reference CriGri_1.0 Primary Assembly

    Range
    171632..178825
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003506176.4 → XP_003506224.2  ATP synthase subunit beta, mitochondrial isoform X1

    UniProtKB/TrEMBL
    A0A8C2MCJ6, G3HRN0
    Conserved Domains (1) summary
    PRK09280
    Location:58 → 524
    PRK09280; F0F1 ATP synthase subunit beta; Validated

Alternate CriGri-PICRH-1.0

Genomic

  1. NW_023276806.1 Alternate CriGri-PICRH-1.0

    Range
    129779781..129787080 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027392727.1 → XP_027248528.1  ATP synthase subunit beta, mitochondrial isoform X2

    UniProtKB/TrEMBL
    A0A8C2MCJ6, G3HRN0
    Related
    ENSCGRP00015057121.1, ENSCGRT00015049539.1
    Conserved Domains (1) summary
    PRK09280
    Location:58 → 524
    PRK09280; F0F1 ATP synthase subunit beta; Validated
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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