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Extl2 exostosin like glycosyltransferase 2 [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 100761218, updated on 8-Mar-2024

Summary

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Gene symbol
Extl2
Gene description
exostosin like glycosyltransferase 2
See related
Ensembl:ENSCGRG00015027176
Gene type
protein coding
RefSeq status
MODEL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See Extl2 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
8
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003615591.1 (81546..104865)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) 1 Unlocalized Scaffold NW_023276806.1 (42221337..42245090, complement)

NW_003615591.1Genomic Context describing neighboring genes Neighboring gene diphthamide biosynthesis 5 Neighboring gene solute carrier family 30 member 7 Neighboring gene small nucleolar RNA U13 Neighboring gene uncharacterized LOC113831072

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Becker J, et al. J Biotechnol, 2011 Dec 10. PMID 21945585
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
exostosin-like 2
Names
Exostosin-like 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003615591.1 Reference CriGri_1.0 Primary Assembly

    Range
    81546..104865
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035436997.1 → XP_035292888.1  exostosin-like 2 isoform X2

    UniProtKB/TrEMBL
    A0A8C2N4K5, G3ID62
    Conserved Domains (1) summary
    pfam09258
    Location:53 → 303
    Glyco_transf_64; Glycosyl transferase family 64 domain

  2. XM_035436996.1 → XP_035292887.1  exostosin-like 2 isoform X2

    UniProtKB/TrEMBL
    A0A8C2N4K5, G3ID62
    Conserved Domains (1) summary
    pfam09258
    Location:53 → 303
    Glyco_transf_64; Glycosyl transferase family 64 domain

  3. XM_007653210.2 → XP_007651400.1  exostosin-like 2 isoform X1

    See identical proteins and their annotated locations for XP_007651400.1

    UniProtKB/TrEMBL
    A0A8C2N4K5, A0A9J7F571
    Conserved Domains (1) summary
    pfam09258
    Location:66 → 312
    Glyco_transf_64; Glycosyl transferase family 64 domain

  4. XM_007653213.2 → XP_007651403.1  exostosin-like 2 isoform X2

    See identical proteins and their annotated locations for XP_007651403.1

    UniProtKB/TrEMBL
    A0A8C2N4K5, G3ID62
    Conserved Domains (1) summary
    pfam09258
    Location:53 → 303
    Glyco_transf_64; Glycosyl transferase family 64 domain

  5. XM_007653214.2 → XP_007651404.1  exostosin-like 2 isoform X2

    See identical proteins and their annotated locations for XP_007651404.1

    UniProtKB/TrEMBL
    A0A8C2N4K5, G3ID62
    Conserved Domains (1) summary
    pfam09258
    Location:53 → 303
    Glyco_transf_64; Glycosyl transferase family 64 domain

  6. XM_007653212.2 → XP_007651402.1  exostosin-like 2 isoform X2

    See identical proteins and their annotated locations for XP_007651402.1

    UniProtKB/TrEMBL
    A0A8C2N4K5, G3ID62
    Conserved Domains (1) summary
    pfam09258
    Location:53 → 303
    Glyco_transf_64; Glycosyl transferase family 64 domain

  7. XM_007653208.2 → XP_007651398.1  exostosin-like 2 isoform X1

    See identical proteins and their annotated locations for XP_007651398.1

    UniProtKB/TrEMBL
    A0A8C2N4K5, A0A9J7F571
    Conserved Domains (1) summary
    pfam09258
    Location:66 → 312
    Glyco_transf_64; Glycosyl transferase family 64 domain

  8. XM_007653215.2 → XP_007651405.1  exostosin-like 2 isoform X2

    See identical proteins and their annotated locations for XP_007651405.1

    UniProtKB/TrEMBL
    A0A8C2N4K5, G3ID62
    Conserved Domains (1) summary
    pfam09258
    Location:53 → 303
    Glyco_transf_64; Glycosyl transferase family 64 domain

  9. XM_007653216.2 → XP_007651406.1  exostosin-like 2 isoform X2

    See identical proteins and their annotated locations for XP_007651406.1

    UniProtKB/TrEMBL
    A0A8C2N4K5, G3ID62
    Conserved Domains (1) summary
    pfam09258
    Location:53 → 303
    Glyco_transf_64; Glycosyl transferase family 64 domain

Alternate CriGri-PICRH-1.0

Genomic

  1. NW_023276806.1 Alternate CriGri-PICRH-1.0

    Range
    42221337..42245090 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027395573.2 → XP_027251374.1  exostosin-like 2 isoform X2

    UniProtKB/TrEMBL
    A0A8C2N4K5, G3ID62
    Conserved Domains (1) summary
    pfam09258
    Location:53 → 303
    Glyco_transf_64; Glycosyl transferase family 64 domain

  2. XM_027395576.2 → XP_027251377.1  exostosin-like 2 isoform X2

    UniProtKB/TrEMBL
    A0A8C2N4K5, G3ID62
    Conserved Domains (1) summary
    pfam09258
    Location:53 → 303
    Glyco_transf_64; Glycosyl transferase family 64 domain

  3. XM_027395575.2 → XP_027251376.1  exostosin-like 2 isoform X2

    UniProtKB/TrEMBL
    A0A8C2N4K5, G3ID62
    Related
    ENSCGRP00015036282.1, ENSCGRT00015044230.2
    Conserved Domains (1) summary
    pfam09258
    Location:53 → 303
    Glyco_transf_64; Glycosyl transferase family 64 domain

  4. XM_027395564.2 → XP_027251365.1  exostosin-like 2 isoform X1

    UniProtKB/TrEMBL
    A0A8C2N4K5, A0A9J7F571

  5. XM_027395568.2 → XP_027251369.1  exostosin-like 2 isoform X2

    UniProtKB/TrEMBL
    A0A8C2N4K5, G3ID62
    Conserved Domains (1) summary
    pfam09258
    Location:53 → 303
    Glyco_transf_64; Glycosyl transferase family 64 domain

  6. XM_027395569.2 → XP_027251370.1  exostosin-like 2 isoform X2

    UniProtKB/TrEMBL
    A0A8C2N4K5, G3ID62
    Conserved Domains (1) summary
    pfam09258
    Location:53 → 303
    Glyco_transf_64; Glycosyl transferase family 64 domain

  7. XM_027395566.2 → XP_027251367.1  exostosin-like 2 isoform X1

    UniProtKB/TrEMBL
    A0A8C2N4K5, A0A9J7F571

  8. XM_035450840.1 → XP_035306731.1  exostosin-like 2 isoform X2

    UniProtKB/TrEMBL
    A0A8C2N4K5, G3ID62
    Conserved Domains (1) summary
    pfam09258
    Location:53 → 303
    Glyco_transf_64; Glycosyl transferase family 64 domain

  9. XM_035450841.1 → XP_035306732.1  exostosin-like 2 isoform X2

    UniProtKB/TrEMBL
    A0A8C2N4K5, G3ID62
    Conserved Domains (1) summary
    pfam09258
    Location:53 → 303
    Glyco_transf_64; Glycosyl transferase family 64 domain

  10. XM_027395567.2 → XP_027251368.1  exostosin-like 2 isoform X1

    UniProtKB/TrEMBL
    A0A8C2N4K5, A0A9J7F571

  11. XM_027395571.2 → XP_027251372.1  exostosin-like 2 isoform X2

    UniProtKB/TrEMBL
    A0A8C2N4K5, G3ID62
    Conserved Domains (1) summary
    pfam09258
    Location:53 → 303
    Glyco_transf_64; Glycosyl transferase family 64 domain

  12. XM_027395574.2 → XP_027251375.1  exostosin-like 2 isoform X2

    UniProtKB/TrEMBL
    A0A8C2N4K5, G3ID62
    Conserved Domains (1) summary
    pfam09258
    Location:53 → 303
    Glyco_transf_64; Glycosyl transferase family 64 domain

  13. XM_027395565.2 → XP_027251366.1  exostosin-like 2 isoform X1

    UniProtKB/TrEMBL
    A0A8C2N4K5, A0A9J7F571
    Related
    ENSCGRP00015036278.2, ENSCGRT00015044225.2

RNA

  1. XR_003481206.2 RNA Sequence

  2. XR_004771729.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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