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Stx4 syntaxin 4 [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 100754836, updated on 8-Mar-2024

Summary

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Gene symbol
Stx4
Gene description
syntaxin 4
See related
Ensembl:ENSCGRG00015024006
Gene type
protein coding
RefSeq status
MODEL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Also known as
Syntaxin-4
Orthologs
human mouse all
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Genomic context

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See Stx4 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
11
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003615000.1 (97304..105028)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) 3 NC_048596.1 (72928005..72935470, complement)

NW_003615000.1Genomic Context describing neighboring genes Neighboring gene hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7 Neighboring gene syntaxin 1B Neighboring gene zinc finger protein 668 Neighboring gene zinc finger protein 646 Neighboring gene serine protease 53

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Becker J, et al. J Biotechnol, 2011 Dec 10. PMID 21945585
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables SNAP receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables SNARE binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in exocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle docking IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle fusion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SNARE complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endomembrane system IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
syntaxin-4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003615000.1 Reference CriGri_1.0 Primary Assembly

    Range
    97304..105028
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003510982.5 → XP_003511030.1  syntaxin-4 isoform X1

    See identical proteins and their annotated locations for XP_003511030.1

    UniProtKB/TrEMBL
    G3I7C7
    Conserved Domains (4) summary
    cd00179
    Location:39 → 189
    SynN; Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may ...
    pfam00804
    Location:39 → 235
    Syntaxin; Syntaxin
    pfam05739
    Location:236 → 287
    SNARE; SNARE domain
    cl22856
    Location:199 → 260
    SNARE; SNARE motif

  2. XM_016979948.3 → XP_016835437.1  syntaxin-4 isoform X2

    UniProtKB/TrEMBL
    A0A9J7JFA3

  3. XM_016979949.2 → XP_016835438.1  syntaxin-4 isoform X3

    UniProtKB/TrEMBL
    A0A9J7FII6

Alternate CriGri-PICRH-1.0

Genomic

  1. NC_048596.1 Alternate CriGri-PICRH-1.0

    Range
    72928005..72935470 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027404527.2 → XP_027260328.1  syntaxin-4 isoform X2

    UniProtKB/TrEMBL
    A0A9J7JFA3

  2. XM_027404526.2 → XP_027260327.1  syntaxin-4 isoform X1

    UniProtKB/TrEMBL
    G3I7C7
    Related
    ENSCGRP00015031870.1, ENSCGRT00015038912.2

  3. XM_027404528.1 → XP_027260329.1  syntaxin-4 isoform X3

    UniProtKB/TrEMBL
    A0A9J7FII6
Nucleotide Protein Strain
Heading Accession and Version

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