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Tnfsf9 TNF superfamily member 9 [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 100750679, updated on 8-Mar-2024

Summary

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Gene symbol
Tnfsf9
Gene description
TNF superfamily member 9
See related
Ensembl:ENSCGRG00015035132
Gene type
protein coding
RefSeq status
MODEL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Orthologs
human mouse all
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Genomic context

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See Tnfsf9 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
3
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003613861.1 (1288862..1291074)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) 5 NC_048598.1 (96454207..96456418, complement)

NW_003613861.1Genomic Context describing neighboring genes Neighboring gene DENN domain containing 1C Neighboring gene tubulin beta 4A class IVa Neighboring gene uncharacterized LOC107979224 Neighboring gene TNF superfamily member 14

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Becker J, et al. J Biotechnol, 2011 Dec 10. PMID 21945585
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables tumor necrosis factor receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of activated T cell proliferation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of cytotoxic T cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tumor necrosis factor ligand superfamily member 9
Names
Tumor necrosis factor ligand superfamily member 9
tumor necrosis factor (ligand) superfamily, member 9
tumor necrosis factor ligand superfamily member 9-like protein
tumor necrosis factor superfamily member 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003613861.1 Reference CriGri_1.0 Primary Assembly

    Range
    1288862..1291074
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003501810.5 → XP_003501858.1  tumor necrosis factor ligand superfamily member 9

    See identical proteins and their annotated locations for XP_003501858.1

    UniProtKB/TrEMBL
    G3HCL3
    Conserved Domains (1) summary
    cl00147
    Location:156 → 276
    TNF; Tumor Necrosis Factor; TNF superfamily members include the cytokines: TNF (TNF-alpha), LT (lymphotoxin-alpha, TNF-beta), CD40 ligand, Apo2L (TRAIL), Fas ligand, and osteoprotegerin (OPG) ligand. These proteins generally have an intracellular N-terminal ...

Alternate CriGri-PICRH-1.0

Genomic

  1. NC_048598.1 Alternate CriGri-PICRH-1.0

    Range
    96454207..96456418 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027416792.2 → XP_027272593.1  tumor necrosis factor ligand superfamily member 9

    UniProtKB/TrEMBL
    G3HCL3
    Related
    ENSCGRP00015050435.1, ENSCGRT00015079091.1
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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