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Tmtc2 transmembrane O-mannosyltransferase targeting cadherins 2 [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 100750470, updated on 8-Mar-2024

Summary

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Gene symbol
Tmtc2
Gene description
transmembrane O-mannosyltransferase targeting cadherins 2
Locus tag
I79_004792
Gene type
protein coding
RefSeq status
MODEL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Orthologs
human mouse all
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Genomic context

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See Tmtc2 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
12
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003613705.1 (1631934..1933088)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) 1 Unlocalized Scaffold NW_023276806.1 (169983972..170162767, complement)

NW_003613705.1Genomic Context describing neighboring genes Neighboring gene jumonji domain containing 6, arginine demethylase and lysine hydroxylase Neighboring gene matrix remodeling associated 7 Neighboring gene 40S ribosomal protein S3-like Neighboring gene uncharacterized LOC113833318 Neighboring gene U1 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-mannosyl-transferase TMTC2
Names
Transmembrane and TPR repeat-containing protein 2
transmembrane and tetratricopeptide repeat containing 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003613705.1 Reference CriGri_1.0 Primary Assembly

    Range
    1631934..1933088
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007634161.4 → XP_007632351.2  protein O-mannosyl-transferase TMTC2 isoform X1

    UniProtKB/TrEMBL
    A0A061IKY8

Alternate CriGri-PICRH-1.0

Genomic

  1. NW_023276806.1 Alternate CriGri-PICRH-1.0

    Range
    169983972..170162767 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035451286.1 → XP_035307177.1  protein O-mannosyl-transferase TMTC2 isoform X2

    UniProtKB/TrEMBL
    G3H3H5
    Conserved Domains (3) summary
    TIGR02917
    Location:247 → 576
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:282 → 310
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:3 → 76
    DUF1736; Domain of unknown function (DUF1736)
Nucleotide Protein Strain
Heading Accession and Version

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