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Scgdelta sarcoglycan delta [ Bombus impatiens (common eastern bumble bee) ]

Gene ID: 100749896, updated on 10-Oct-2024

Summary

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Gene symbol
Scgdelta
Gene description
sarcoglycan delta
See related
EnsemblRapid:ENSBIMG00000016849
Gene type
protein coding
RefSeq status
MODEL
Organism
Bombus impatiens
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Anthophila; Apidae; Bombus; Pyrobombus
Orthologs
fruit fly honey bee all
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Genomic context

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See Scgdelta in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
103 current BIMP_2.2 (GCF_000188095.3) Unplaced Scaffold NT_176436.1 (1183508..1406089)

NT_176436.1Genomic Context describing neighboring genes Neighboring gene tyrosine-protein phosphatase 99A Neighboring gene uncharacterized LOC112212036 Neighboring gene Down syndrome cell adhesion molecule-like protein Dscam2 Neighboring gene uncharacterized LOC117151160 Neighboring gene protein Cep78 homolog Neighboring gene uncharacterized LOC117151195

Genomic regions, transcripts, and products

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Genomic Sequence:
NT_176436 Unplaced Scaffold Reference BIMP_2.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zeta-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bombus impatiens Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BIMP_2.2

Genomic

  1. NT_176436.1 Reference BIMP_2.2

    Range
    1183508..1406089
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033318465.1 → XP_033174356.1  zeta-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A6P8LGP5
    Conserved Domains (1) summary
    pfam04790
    Location:130 → 401
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  2. XM_033318473.1 → XP_033174364.1  zeta-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A6P8LGP5
    Conserved Domains (1) summary
    pfam04790
    Location:130 → 401
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  3. XM_033318477.1 → XP_033174368.1  zeta-sarcoglycan isoform X4

    UniProtKB/TrEMBL
    A0A6P8KYW7
    Conserved Domains (1) summary
    pfam04790
    Location:79 → 350
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  4. XM_033318468.1 → XP_033174359.1  zeta-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A6P8LGP5
    Conserved Domains (1) summary
    pfam04790
    Location:130 → 401
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  5. XM_033318471.1 → XP_033174362.1  zeta-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A6P8LGP5
    Conserved Domains (1) summary
    pfam04790
    Location:130 → 401
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  6. XM_003484506.4 → XP_003484554.1  zeta-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A6P8LGP5
    Conserved Domains (1) summary
    pfam04790
    Location:130 → 401
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  7. XM_024364492.2 → XP_024220260.1  zeta-sarcoglycan isoform X3

    UniProtKB/TrEMBL
    A0A6P6F5Z3
    Related
    ENSBIMP00000025117.1, ENSBIMT00000038754.1
    Conserved Domains (1) summary
    pfam04790
    Location:80 → 351
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  8. XM_024364483.2 → XP_024220251.1  zeta-sarcoglycan isoform X2

    UniProtKB/TrEMBL
    A0A6P6F664
    Related
    ENSBIMP00000025120.1, ENSBIMT00000038760.1
    Conserved Domains (1) summary
    pfam04790
    Location:89 → 360
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  9. XM_024364497.2 → XP_024220265.1  zeta-sarcoglycan isoform X5

    UniProtKB/TrEMBL
    A0A6P6F668
    Related
    ENSBIMP00000025119.1, ENSBIMT00000038756.1
    Conserved Domains (1) summary
    pfam04790
    Location:51 → 322
    Sarcoglycan_1; Sarcoglycan complex subunit protein
Nucleotide Protein
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