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Hs6st heparan sulfate 6-O-sulfotransferase [ Bombus impatiens (common eastern bumble bee) ]

Gene ID: 100742931, updated on 10-Oct-2024

Summary

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Gene symbol
Hs6st
Gene description
heparan sulfate 6-O-sulfotransferase
See related
EnsemblRapid:ENSBIMG00000015858
Gene type
protein coding
RefSeq status
MODEL
Organism
Bombus impatiens
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Anthophila; Apidae; Bombus; Pyrobombus
Orthologs
fruit fly honey bee all
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Genomic context

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See Hs6st in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
103 current BIMP_2.2 (GCF_000188095.3) Unplaced Scaffold NT_176470.1 (757380..761679)

NT_176470.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100744718 Neighboring gene dynactin subunit 3 Neighboring gene SPRY domain-containing protein 7 Neighboring gene ribosomal protein L35A

Genomic regions, transcripts, and products

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Genomic Sequence:
NT_176470 Unplaced Scaffold Reference BIMP_2.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genes involved in convergent evolution of eusociality in bees. Woodard SH, et al. Proc Natl Acad Sci U S A, 2011 May 3. PMID 21482769, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heparan sulfate 6-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, enzymatic modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparan-sulfate 6-O-sulfotransferase 1-B; heparan-sulfate 6-O-sulfotransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bombus impatiens Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BIMP_2.2

Genomic

  1. NT_176470.1 Reference BIMP_2.2

    Range
    757380..761679
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024371981.2 → XP_024227749.1  heparan-sulfate 6-O-sulfotransferase 2 isoform X2

    UniProtKB/TrEMBL
    A0A6P6FJ97
    Related
    ENSBIMP00000023541.1, ENSBIMT00000036738.1
    Conserved Domains (1) summary
    cl22970
    Location:133 → 258
    Sulfotransfer_2; Sulfotransferase family

  2. XM_003485361.4 → XP_003485409.1  heparan-sulfate 6-O-sulfotransferase 1-B isoform X1

    See identical proteins and their annotated locations for XP_003485409.1

    UniProtKB/TrEMBL
    A0A6P3DKM1
    Related
    ENSBIMP00000023540.1, ENSBIMT00000036744.1
    Conserved Domains (1) summary
    pfam03567
    Location:133 → 395
    Sulfotransfer_2; Sulfotransferase family
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases