U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

AFF1 ALF transcription elongation factor 1 [ Sus scrofa (pig) ]

Gene ID: 100739621, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Official Symbol
AFF1provided by VGNC
Official Full Name
ALF transcription elongation factor 1provided by VGNC
Primary source
VGNC:VGNC:85167
See related
Ensembl:ENSSSCG00000023593
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in ovary (RPKM 14.0), kidney (RPKM 7.3) and 8 other tissues See more
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See AFF1 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
26
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 8 NC_010450.4 (131728819..131924814, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 8 NC_010450.3 (141000099..141105435)

Chromosome 8 - NC_010450.4Genomic Context describing neighboring genes Neighboring gene hydroxysteroid 17-beta dehydrogenase 13 Neighboring gene kelch like family member 8 Neighboring gene uncharacterized LOC106504773 Neighboring gene chromosome 8 C4orf36 homolog Neighboring gene ubiquitin-conjugating enzyme E2 D3 pseudogene Neighboring gene solute carrier family 10 member 6

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of super elongation complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
AF4/FMR2 family member 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010450.4 Reference Sscrofa11.1 Primary Assembly

    Range
    131728819..131924814 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021101783.1 → XP_020957442.1  AF4/FMR2 family member 1 isoform X4

    UniProtKB/TrEMBL
    A0A8D1MCR6
    Conserved Domains (1) summary
    pfam05110
    Location:17 → 1224
    AF-4; AF-4 proto-oncoprotein

  2. XM_021101780.1 → XP_020957439.1  AF4/FMR2 family member 1 isoform X1

    UniProtKB/TrEMBL
    A0A8D1MCR6
    Conserved Domains (1) summary
    pfam05110
    Location:17 → 1225
    AF-4; AF-4 proto-oncoprotein

  3. XM_021101781.1 → XP_020957440.1  AF4/FMR2 family member 1 isoform X2

    UniProtKB/TrEMBL
    A0A8D1APF4
    Conserved Domains (1) summary
    pfam05110
    Location:16 → 1224
    AF-4; AF-4 proto-oncoprotein

  4. XM_021101782.1 → XP_020957441.1  AF4/FMR2 family member 1 isoform X3

    UniProtKB/TrEMBL
    A0A8D1APF4
    Conserved Domains (1) summary
    pfam05110
    Location:17 → 1224
    AF-4; AF-4 proto-oncoprotein

  5. XM_021101786.1 → XP_020957445.1  AF4/FMR2 family member 1 isoform X7

    UniProtKB/TrEMBL
    A0A8D2CIN0
    Conserved Domains (1) summary
    pfam05110
    Location:9 → 1216
    AF-4; AF-4 proto-oncoprotein

  6. XM_021101785.1 → XP_020957444.1  AF4/FMR2 family member 1 isoform X6

    UniProtKB/TrEMBL
    A0A8D2CIN0, F1RW30
    Related
    ENSSSCP00000009837.3, ENSSSCT00000010103.3
    Conserved Domains (1) summary
    pfam05110
    Location:9 → 1217
    AF-4; AF-4 proto-oncoprotein

  7. XM_021101784.1 → XP_020957443.1  AF4/FMR2 family member 1 isoform X5

    UniProtKB/TrEMBL
    A0A8D2CIN0
    Conserved Domains (1) summary
    pfam05110
    Location:10 → 1218
    AF-4; AF-4 proto-oncoprotein

  8. XM_021101790.1 → XP_020957449.1  AF4/FMR2 family member 1 isoform X8

    UniProtKB/TrEMBL
    A0A8D2AEC2, I3LAK6
    Related
    ENSSSCP00000066619.2, ENSSSCT00000073192.2
    Conserved Domains (1) summary
    pfam05110
    Location:1 → 1158
    AF-4; AF-4 proto-oncoprotein

  9. XM_021101788.1 → XP_020957447.1  AF4/FMR2 family member 1 isoform X8

    UniProtKB/TrEMBL
    A0A8D2AEC2, I3LAK6
    Related
    ENSSSCP00000021074.4, ENSSSCT00000031231.4
    Conserved Domains (1) summary
    pfam05110
    Location:1 → 1158
    AF-4; AF-4 proto-oncoprotein

  10. XM_021101789.1 → XP_020957448.1  AF4/FMR2 family member 1 isoform X8

    UniProtKB/TrEMBL
    A0A8D2AEC2, I3LAK6
    Conserved Domains (1) summary
    pfam05110
    Location:1 → 1158
    AF-4; AF-4 proto-oncoprotein

  11. XM_021101787.1 → XP_020957446.1  AF4/FMR2 family member 1 isoform X8

    UniProtKB/TrEMBL
    A0A8D2AEC2, I3LAK6
    Conserved Domains (1) summary
    pfam05110
    Location:1 → 1158
    AF-4; AF-4 proto-oncoprotein

  12. XM_021101791.1 → XP_020957450.1  AF4/FMR2 family member 1 isoform X9

    Conserved Domains (1) summary
    pfam05110
    Location:3 → 866
    AF-4; AF-4 proto-oncoprotein
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.