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ST3GAL6 ST3 beta-galactoside alpha-2,3-sialyltransferase 6 [ Sus scrofa (pig) ]

Gene ID: 100739492, updated on 17-Aug-2024

Summary

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Official Symbol
ST3GAL6provided by VGNC
Official Full Name
ST3 beta-galactoside alpha-2,3-sialyltransferase 6provided by VGNC
Primary source
VGNC:VGNC:93506
See related
Ensembl:ENSSSCG00000034493
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in kidney (RPKM 12.7), ovary (RPKM 6.1) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See ST3GAL6 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
16
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 13 NC_010455.5 (160158238..160225355, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 13 NC_010455.4 (170305811..170328056, complement)

Chromosome 13 - NC_010455.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110256225 Neighboring gene 40S ribosomal protein S27-like Neighboring gene discoidin, CUB and LCCL domain containing 2 Neighboring gene ferritin, heavy subunit-like Neighboring gene coproporphyrinogen oxidase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-galactoside alpha-2,3-sialyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
type 2 lactosamine alpha-2,3-sialyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010455.5 Reference Sscrofa11.1 Primary Assembly

    Range
    160158238..160225355 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021070677.1 → XP_020926336.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X3

    UniProtKB/TrEMBL
    A0A0B8RS85, A0A4X1UPF7, A0A4X1UTD1, A0A4X1UUC9, A0A8D1GJD9
    Conserved Domains (1) summary
    pfam00777
    Location:77 → 330
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  2. XM_021070684.1 → XP_020926343.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X5

    UniProtKB/TrEMBL
    A0A4X1UTD1, A0A8D1GJD9
    Conserved Domains (1) summary
    pfam00777
    Location:42 → 295
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  3. XM_021070675.1 → XP_020926334.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X3

    UniProtKB/TrEMBL
    A0A0B8RS85, A0A4X1UPF7, A0A4X1UTD1, A0A4X1UUC9, A0A8D1GJD9
    Conserved Domains (1) summary
    pfam00777
    Location:77 → 330
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  4. XM_021070673.1 → XP_020926332.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X3

    UniProtKB/TrEMBL
    A0A0B8RS85, A0A4X1UPF7, A0A4X1UTD1, A0A4X1UUC9, A0A8D1GJD9
    Conserved Domains (1) summary
    pfam00777
    Location:77 → 330
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  5. XM_021070674.1 → XP_020926333.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X3

    UniProtKB/TrEMBL
    A0A0B8RS85, A0A4X1UPF7, A0A4X1UTD1, A0A4X1UUC9, A0A8D1GJD9
    Conserved Domains (1) summary
    pfam00777
    Location:77 → 330
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  6. XM_021070682.1 → XP_020926341.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X5

    UniProtKB/TrEMBL
    A0A4X1UTD1, A0A8D1GJD9
    Conserved Domains (1) summary
    pfam00777
    Location:42 → 295
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  7. XM_021070676.1 → XP_020926335.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X3

    UniProtKB/TrEMBL
    A0A0B8RS85, A0A4X1UPF7, A0A4X1UTD1, A0A4X1UUC9, A0A8D1GJD9
    Related
    ENSSSCP00000035826.2, ENSSSCT00000041501.3
    Conserved Domains (1) summary
    pfam00777
    Location:77 → 330
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  8. XM_021070683.1 → XP_020926342.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X5

    UniProtKB/TrEMBL
    A0A4X1UTD1, A0A8D1GJD9
    Conserved Domains (1) summary
    pfam00777
    Location:42 → 295
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  9. XM_021070679.1 → XP_020926338.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X4

    UniProtKB/TrEMBL
    A0A286ZXE1
    Conserved Domains (1) summary
    pfam00777
    Location:42 → 317
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  10. XM_021070667.1 → XP_020926326.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X1

    UniProtKB/TrEMBL
    A0A4X1UTD1, A0A4X1UUB5, A0A8D0JD71, A0A8D1GJD9
    Conserved Domains (1) summary
    pfam00777
    Location:77 → 352
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  11. XM_021070666.1 → XP_020926325.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X1

    UniProtKB/TrEMBL
    A0A4X1UTD1, A0A4X1UUB5, A0A8D0JD71, A0A8D1GJD9
    Conserved Domains (1) summary
    pfam00777
    Location:77 → 352
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  12. XM_021070664.1 → XP_020926323.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X1

    UniProtKB/TrEMBL
    A0A4X1UTD1, A0A4X1UUB5, A0A8D0JD71, A0A8D1GJD9
    Conserved Domains (1) summary
    pfam00777
    Location:77 → 352
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  13. XM_021070665.1 → XP_020926324.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X1

    UniProtKB/TrEMBL
    A0A4X1UTD1, A0A4X1UUB5, A0A8D0JD71, A0A8D1GJD9
    Conserved Domains (1) summary
    pfam00777
    Location:77 → 352
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  14. XM_021070668.1 → XP_020926327.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X1

    UniProtKB/TrEMBL
    A0A4X1UTD1, A0A4X1UUB5, A0A8D0JD71, A0A8D1GJD9
    Conserved Domains (1) summary
    pfam00777
    Location:77 → 352
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  15. XM_021070680.1 → XP_020926339.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X4

    UniProtKB/TrEMBL
    A0A286ZXE1
    Conserved Domains (1) summary
    pfam00777
    Location:42 → 317
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  16. XM_021070671.1 → XP_020926330.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X1

    UniProtKB/TrEMBL
    A0A4X1UTD1, A0A4X1UUB5, A0A8D0JD71, A0A8D1GJD9
    Conserved Domains (1) summary
    pfam00777
    Location:77 → 352
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  17. XM_021070678.1 → XP_020926337.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X4

    UniProtKB/TrEMBL
    A0A286ZXE1
    Conserved Domains (1) summary
    pfam00777
    Location:42 → 317
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  18. XM_021070669.1 → XP_020926328.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X1

    UniProtKB/TrEMBL
    A0A4X1UTD1, A0A4X1UUB5, A0A8D0JD71, A0A8D1GJD9
    Conserved Domains (1) summary
    pfam00777
    Location:77 → 352
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  19. XM_021070672.1 → XP_020926331.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X2

    UniProtKB/TrEMBL
    A0A287AMU7, A0A4X1UT37, A0A8D0ZVZ2
    Related
    ENSSSCP00000045231.2, ENSSSCT00000058613.3
    Conserved Domains (1) summary
    pfam00777
    Location:77 → 299
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  20. XM_021070685.1 → XP_020926344.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X6

    UniProtKB/TrEMBL
    A0A4X1UT16
    Related
    ENSSSCP00000057864.2, ENSSSCT00000037464.3
    Conserved Domains (1) summary
    pfam00777
    Location:77 → 235
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)
Nucleotide Protein
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