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RMC1 regulator of MON1-CCZ1 [ Sus scrofa (pig) ]

Gene ID: 100739220, updated on 17-Aug-2024

Summary

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Official Symbol
RMC1provided by VGNC
Official Full Name
regulator of MON1-CCZ1provided by VGNC
Primary source
VGNC:VGNC:92330
See related
Ensembl:ENSSSCG00000026851
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as
WDR98; C6H18orf8
Expression
Ubiquitous expression in ovary (RPKM 16.9), spleen (RPKM 6.7) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See RMC1 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
21
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 6 NC_010448.4 (108376763..108403175)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 6 NC_010448.3 (101000372..101001998)

Chromosome 6 - NC_010448.4Genomic Context describing neighboring genes Neighboring gene Cdk5 and Abl enzyme substrate 1 Neighboring gene transmembrane protein 241 Neighboring gene RIO kinase 3 Neighboring gene NPC intracellular cholesterol transporter 1 Neighboring gene ankyrin repeat domain 29 Neighboring gene laminin subunit alpha 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of autophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Mon1-Ccz1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in late endosome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lysosomal membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein C18orf8 homolog
Names
WD repeat domain 98
chromosome 6 C18orf8 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010448.4 Reference Sscrofa11.1 Primary Assembly

    Range
    108376763..108403175
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021096180.1 → XP_020951839.1  uncharacterized protein C18orf8 homolog isoform X1

    UniProtKB/TrEMBL
    A0A287A4H7, A0A4X1VMT3, A0A8D1S9C1
    Related
    ENSSSCP00000038679.1, ENSSSCT00000062089.3
    Conserved Domains (1) summary
    pfam07035
    Location:475 → 631
    Mic1; Colon cancer-associated protein Mic1-like

  2. XM_021096181.1 → XP_020951840.1  uncharacterized protein C18orf8 homolog isoform X2

    UniProtKB/TrEMBL
    A0A8D1GE91
    Conserved Domains (1) summary
    pfam07035
    Location:419 → 565
    Mic1; Colon cancer-associated protein Mic1-like

  3. XM_021096182.1 → XP_020951841.1  uncharacterized protein C18orf8 homolog isoform X3

    UniProtKB/TrEMBL
    A0A8D0IPQ7
    Conserved Domains (1) summary
    pfam07035
    Location:361 → 517
    Mic1; Colon cancer-associated protein Mic1-like
Nucleotide Protein
Heading Accession and Version

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