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DDX10 DEAD-box helicase 10 [ Sus scrofa (pig) ]

Gene ID: 100739082, updated on 17-Aug-2024

Summary

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Official Symbol
DDX10provided by VGNC
Official Full Name
DEAD-box helicase 10provided by VGNC
Primary source
VGNC:VGNC:108579
See related
Ensembl:ENSSSCG00000015011
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in ovary (RPKM 8.4), kidney (RPKM 8.1) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See DDX10 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
18
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 9 NC_010451.4 (37006571..37265973)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 9 NC_010451.3 (41265775..41269199, complement)

Chromosome 9 - NC_010451.4Genomic Context describing neighboring genes Neighboring gene KDEL motif-containing protein 2 Neighboring gene uncharacterized LOC106504871 Neighboring gene chromosome 9 C11orf87 homolog Neighboring gene putative elongation factor 1-alpha-like 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in rRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable ATP-dependent RNA helicase DDX10

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010451.4 Reference Sscrofa11.1 Primary Assembly

    Range
    37006571..37265973
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021062753.1 → XP_020918412.1  probable ATP-dependent RNA helicase DDX10

    UniProtKB/TrEMBL
    A0A4X1TKK5, A0A8D0RR31, F1SV16
    Related
    ENSSSCP00000015935.3, ENSSSCT00000016375.5
    Conserved Domains (3) summary
    COG0513
    Location:50 → 472
    SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
    pfam09507
    Location:654 → 849
    CDC27; DNA polymerase subunit Cdc27
    pfam13959
    Location:451 → 510
    DUF4217; Domain of unknown function (DUF4217)
Nucleotide Protein
Heading Accession and Version

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