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CENPC centromere protein C [ Sus scrofa (pig) ]

Gene ID: 100737668, updated on 17-Aug-2024

Summary

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Official Symbol
CENPCprovided by VGNC
Official Full Name
centromere protein Cprovided by VGNC
Primary source
VGNC:VGNC:86546
See related
Ensembl:ENSSSCG00000008921
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as
CENPC1
Expression
Ubiquitous expression in spleen (RPKM 9.7), ovary (RPKM 9.3) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See CENPC in Genome Data Viewer
Location:
chromosome: 8
Exon count:
20
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 8 NC_010450.4 (65237825..65315788, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 8 NC_010450.3 (69658715..69740181, complement)

Chromosome 8 - NC_010450.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102160681 Neighboring gene uncharacterized LOC110262012 Neighboring gene ribulose-phosphate 3-epimerase-like Neighboring gene signal transducing adaptor family member 1 Neighboring gene ubiquitin like modifier activating enzyme 6 Neighboring gene gonadotropin releasing hormone receptor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables centromeric DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in attachment of mitotic spindle microtubules to kinetochore IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in kinetochore assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in spindle attachment to meiosis I kinetochore IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in kinetochore IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
centromere protein C
Names
centromere protein C 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010450.4 Reference Sscrofa11.1 Primary Assembly

    Range
    65237825..65315788 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003482404.4 → XP_003482452.2  centromere protein C isoform X1

    UniProtKB/TrEMBL
    A0A4X1THD3, F1RVF8
    Related
    ENSSSCP00000009517.3, ENSSSCT00000009769.5
    Conserved Domains (3) summary
    pfam11699
    Location:864 → 948
    CENP-C_C; Mif2/CENP-C like
    pfam15620
    Location:297 → 558
    CENP-C_mid; Centromere assembly component CENP-C middle DNMT3B-binding region
    pfam15622
    Location:7 → 292
    CENP_C_N; Kinetochore assembly subunit CENP-C N-terminal

  2. XM_013978751.2 → XP_013834205.2  centromere protein C isoform X2

    UniProtKB/TrEMBL
    A0A287AIB3, A0A4X1THD8
    Related
    ENSSSCP00000043619.1, ENSSSCT00000059921.2
    Conserved Domains (3) summary
    pfam11699
    Location:800 → 884
    CENP-C_C; Mif2/CENP-C like
    pfam15620
    Location:297 → 512
    CENP-C_mid; Centromere assembly component CENP-C middle DNMT3B-binding region
    pfam15622
    Location:7 → 292
    CENP_C_N; Kinetochore assembly subunit CENP-C N-terminal

  3. XM_021101386.1 → XP_020957045.1  centromere protein C isoform X3

    UniProtKB/TrEMBL
    A0A8D0KKK0
    Conserved Domains (3) summary
    pfam11699
    Location:767 → 851
    CENP-C_C; Mif2/CENP-C like
    pfam15620
    Location:200 → 461
    CENP-C_mid; Centromere assembly component CENP-C middle DNMT3B-binding region
    pfam15622
    Location:1 → 195
    CENP_C_N; Kinetochore assembly subunit CENP-C N-terminal
Nucleotide Protein
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