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GPC5 glypican 5 [ Sus scrofa (pig) ]

Gene ID: 100737621, updated on 17-Aug-2024

Summary

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Official Symbol
GPC5provided by VGNC
Official Full Name
glypican 5provided by VGNC
Primary source
VGNC:VGNC:88582
See related
Ensembl:ENSSSCG00000031946
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Low expression observed in reference dataset See more
Orthologs
human mouse all
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Genomic context

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See GPC5 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
9
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 11 NC_010453.5 (60791000..62149911)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 11 NC_010453.4 (66666602..67323189)

Chromosome 11 - NC_010453.5Genomic Context describing neighboring genes Neighboring gene microRNA mir-19b-1 Neighboring gene microRNA mir-92a-1 Neighboring gene uncharacterized LOC106505326 Neighboring gene cytochrome c pseudogene Neighboring gene glypican 6 Neighboring gene dopachrome tautomerase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of canonical Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of protein localization to membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in collagen-containing extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glypican-5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010453.5 Reference Sscrofa11.1 Primary Assembly

    Range
    60791000..62149911
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021065368.1 → XP_020921027.1  glypican-5 isoform X1

    UniProtKB/TrEMBL
    A0A287AJ15, A0A4X1V084
    Related
    ENSSSCP00000043997.2, ENSSSCT00000054202.3
    Conserved Domains (1) summary
    pfam01153
    Location:20 → 568
    Glypican

  2. XM_021065370.1 → XP_020921029.1  glypican-5 isoform X3

    UniProtKB/TrEMBL
    A0A8D0RXZ7, A0A8D0ZIU3, A0A8D1QKH3
    Conserved Domains (1) summary
    pfam01153
    Location:20 → 423
    Glypican

  3. XM_021065369.1 → XP_020921028.1  glypican-5 isoform X2

    UniProtKB/TrEMBL
    A0A8D0RXZ7, A0A8D0ZIU3, A0A8D1QKH3
    Conserved Domains (1) summary
    pfam01153
    Location:20 → 467
    Glypican
Nucleotide Protein
Heading Accession and Version

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