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MCFD2 multiple coagulation factor deficiency 2, ER cargo receptor complex subunit [ Sus scrofa (pig) ]

Gene ID: 100736833, updated on 17-Aug-2024

Summary

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Official Symbol
MCFD2provided by VGNC
Official Full Name
multiple coagulation factor deficiency 2, ER cargo receptor complex subunitprovided by VGNC
Primary source
VGNC:VGNC:103980
See related
Ensembl:ENSSSCG00000021325
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in liver (RPKM 63.8), heart (RPKM 41.5) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See MCFD2 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
5
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 3 NC_010445.4 (93620921..93633018)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 3 NC_010445.3 (99712888..99719379)

Chromosome 3 - NC_010445.4Genomic Context describing neighboring genes Neighboring gene sperm-tail PG-rich repeat containing 4 Neighboring gene tetratricopeptide repeat domain 7A Neighboring gene uncharacterized LOC110260019 Neighboring gene uncharacterized LOC102160749

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
multiple coagulation factor deficiency protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010445.4 Reference Sscrofa11.1 Primary Assembly

    Range
    93620921..93633018
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021087556.1 → XP_020943215.1  multiple coagulation factor deficiency protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A4X1SHY2, K7GQY4
    Related
    ENSSSCP00000030309.3, ENSSSCT00000035262.4
    Conserved Domains (1) summary
    pfam13499
    Location:164 → 229
    EF-hand_7; EF-hand domain pair

  2. XM_021087557.1 → XP_020943216.1  multiple coagulation factor deficiency protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A4X1SGZ8, A0A8D0TYW4, I3LV84
    Related
    ENSSSCP00000028036.3, ENSSSCT00000028543.4
    Conserved Domains (1) summary
    pfam13499
    Location:74 → 139
    EF-hand_7; EF-hand domain pair
Nucleotide Protein
Heading Accession and Version

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