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B4GALT2 beta-1,4-galactosyltransferase 2 [ Sus scrofa (pig) ]

Gene ID: 100736821, updated on 17-Aug-2024

Summary

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Official Symbol
B4GALT2provided by VGNC
Official Full Name
beta-1,4-galactosyltransferase 2provided by VGNC
Primary source
VGNC:VGNC:85733
See related
Ensembl:ENSSSCG00000026793
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in ovary (RPKM 15.1), subcutaneous adipose (RPKM 11.0) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 6
Exon count:
9
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 6 NC_010448.4 (167305903..167316009, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 6 NC_010448.3 (154765901..154772143, complement)

Chromosome 6 - NC_010448.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102163655 Neighboring gene solute carrier family 6 member 9 Neighboring gene coiled-coil domain containing 24 Neighboring gene ATPase H+ transporting V0 subunit b Neighboring gene diphthamide biosynthesis 2 Neighboring gene importin 13

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,4-galactosyltransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010448.4 Reference Sscrofa11.1 Primary Assembly

    Range
    167305903..167316009 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021096829.1 → XP_020952488.1  beta-1,4-galactosyltransferase 2 isoform X1

    UniProtKB/TrEMBL
    A0A4X1W334, A0A8D1KM33, I3LDA7
    Related
    ENSSSCP00000022036.2, ENSSSCT00000030846.3
    Conserved Domains (2) summary
    cd00899
    Location:142 → 358
    b4GalT; Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids
    cl26247
    Location:46 → 126
    DNA_pol3_delta2; DNA polymerase III, delta subunit

  2. XM_021096830.1 → XP_020952489.1  beta-1,4-galactosyltransferase 2 isoform X2

    UniProtKB/TrEMBL
    A0A480ZYS8, A0A4X1W893, A0A8D0Z547
    Related
    ENSSSCP00000066775.2, ENSSSCT00000075847.2
    Conserved Domains (2) summary
    cd00899
    Location:142 → 321
    b4GalT; Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids
    cl26247
    Location:46 → 126
    DNA_pol3_delta2; DNA polymerase III, delta subunit

RNA

  1. XR_002345230.1 RNA Sequence

  2. XR_002345228.1 RNA Sequence

  3. XR_002345231.1 RNA Sequence

  4. XR_002345229.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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