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Nr4a1 nuclear receptor subfamily 4 group A member 1 [ Cavia porcellus (domestic guinea pig) ]

Gene ID: 100732875, updated on 8-Mar-2024

Summary

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Gene symbol
Nr4a1
Gene description
nuclear receptor subfamily 4 group A member 1
See related
Ensembl:ENSCPOG00000003095
Gene type
protein coding
RefSeq status
MODEL
Organism
Cavia porcellus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
Orthologs
human mouse all
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Genomic context

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See Nr4a1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_02 current mCavPor4.1 (GCF_034190915.1) Unplaced Scaffold NW_026947491.1 (43428741..43451569)
103 previous assembly Cavpor3.0 (GCF_000151735.1) Unplaced Scaffold NT_176410.1 (47729821..47752593, complement)

NW_026947491.1Genomic Context describing neighboring genes Neighboring gene activin A receptor type 1B Neighboring gene trafficking regulator and scaffold protein tamalin Neighboring gene uncharacterized LOC134477313 Neighboring gene autophagy related 101 Neighboring gene DNA-directed RNA polymerases I, II, and III subunit RPABC4-like Neighboring gene small integral membrane protein 41

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear glucocorticoid receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellular response to corticotropin-releasing hormone stimulus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear receptor subfamily 4immunitygroup A member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034190915.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCavPor4.1

Genomic

  1. NW_026947491.1 Reference mCavPor4.1

    Range
    43428741..43451569
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005006462.4 → XP_005006519.1  nuclear receptor subfamily 4immunitygroup A member 1 isoform X2

    See identical proteins and their annotated locations for XP_005006519.1

    UniProtKB/TrEMBL
    H0V023
    Conserved Domains (2) summary
    cd07348
    Location:361 → 598
    NR_LBD_NGFI-B; The ligand binding domain of Nurr1, a member of conserved family of nuclear receptors
    cd06969
    Location:265 → 339
    NR_DBD_NGFI-B; DNA-binding domain of the orphan nuclear receptor, nerve growth factor-induced-B

  2. XM_013159323.3 → XP_013014777.1  nuclear receptor subfamily 4immunitygroup A member 1 isoform X2

    See identical proteins and their annotated locations for XP_013014777.1

    UniProtKB/TrEMBL
    H0V023
    Conserved Domains (2) summary
    cd07348
    Location:361 → 598
    NR_LBD_NGFI-B; The ligand binding domain of Nurr1, a member of conserved family of nuclear receptors
    cd06969
    Location:265 → 339
    NR_DBD_NGFI-B; DNA-binding domain of the orphan nuclear receptor, nerve growth factor-induced-B

  3. XM_005006461.4 → XP_005006518.1  nuclear receptor subfamily 4immunitygroup A member 1 isoform X2

    See identical proteins and their annotated locations for XP_005006518.1

    UniProtKB/TrEMBL
    H0V023
    Conserved Domains (2) summary
    cd07348
    Location:361 → 598
    NR_LBD_NGFI-B; The ligand binding domain of Nurr1, a member of conserved family of nuclear receptors
    cd06969
    Location:265 → 339
    NR_DBD_NGFI-B; DNA-binding domain of the orphan nuclear receptor, nerve growth factor-induced-B

  4. XM_005006460.4 → XP_005006517.1  nuclear receptor subfamily 4immunitygroup A member 1 isoform X2

    See identical proteins and their annotated locations for XP_005006517.1

    UniProtKB/TrEMBL
    H0V023
    Conserved Domains (2) summary
    cd07348
    Location:361 → 598
    NR_LBD_NGFI-B; The ligand binding domain of Nurr1, a member of conserved family of nuclear receptors
    cd06969
    Location:265 → 339
    NR_DBD_NGFI-B; DNA-binding domain of the orphan nuclear receptor, nerve growth factor-induced-B

  5. XM_063254799.1 → XP_063110869.1  nuclear receptor subfamily 4immunitygroup A member 1 isoform X1

Nucleotide Protein
Heading Accession and Version

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