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B3galnt1 beta-1,3-N-acetylgalactosaminyltransferase 1 (Globoside blood group) [ Cavia porcellus (domestic guinea pig) ]

Gene ID: 100729840, updated on 8-Mar-2024

Summary

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Gene symbol
B3galnt1
Gene description
beta-1,3-N-acetylgalactosaminyltransferase 1 (Globoside blood group)
See related
Ensembl:ENSCPOG00000002846
Gene type
protein coding
RefSeq status
MODEL
Organism
Cavia porcellus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
Orthologs
human mouse all
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Genomic context

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See B3galnt1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current mCavPor4.1 (GCF_034190915.1) Unplaced Scaffold NW_026947488.1 (86210280..86236049, complement)
103 previous assembly Cavpor3.0 (GCF_000151735.1) Unplaced Scaffold NT_176411.1 (58032605..58057550, complement)

NW_026947488.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134476137 Neighboring gene KATNB1-like protein 1 Neighboring gene protein phosphatase, Mg2+/Mn2+ dependent 1L Neighboring gene 5S ribosomal RNA Neighboring gene NMD3 ribosome export adaptor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034190915.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCavPor4.1

Genomic

  1. NW_026947488.1 Reference mCavPor4.1

    Range
    86210280..86236049 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005006737.4 → XP_005006794.1  UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 1

    See identical proteins and their annotated locations for XP_005006794.1

    UniProtKB/TrEMBL
    H0UZH9
    Conserved Domains (1) summary
    pfam01762
    Location:92 → 285
    Galactosyl_T; Galactosyltransferase

  2. XM_005006738.4 → XP_005006795.1  UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 1

    See identical proteins and their annotated locations for XP_005006795.1

    UniProtKB/TrEMBL
    H0UZH9
    Conserved Domains (1) summary
    pfam01762
    Location:92 → 285
    Galactosyl_T; Galactosyltransferase

  3. XM_005006739.4 → XP_005006796.1  UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 1

    See identical proteins and their annotated locations for XP_005006796.1

    UniProtKB/TrEMBL
    H0UZH9
    Related
    ENSCPOP00000002588.1
    Conserved Domains (1) summary
    pfam01762
    Location:92 → 285
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
Heading Accession and Version

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