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Ptpn7 protein tyrosine phosphatase non-receptor type 7 [ Cavia porcellus (domestic guinea pig) ]

Gene ID: 100723664, updated on 8-Mar-2024

Summary

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Gene symbol
Ptpn7
Gene description
protein tyrosine phosphatase non-receptor type 7
See related
Ensembl:ENSCPOG00000003034
Gene type
protein coding
RefSeq status
MODEL
Organism
Cavia porcellus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
Orthologs
human mouse all
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Genomic context

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See Ptpn7 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_02 current mCavPor4.1 (GCF_034190915.1) Unplaced Scaffold NW_026947512.1 (22088579..22105472)
103 previous assembly Cavpor3.0 (GCF_000151735.1) Unplaced Scaffold NT_176407.1 (20304968..20320951)

NW_026947512.1Genomic Context describing neighboring genes Neighboring gene leucine rich repeat containing G protein-coupled receptor 6 Neighboring gene receptor-type tyrosine-protein phosphatase V-like Neighboring gene uncharacterized LOC111758274 Neighboring gene ARF like GTPase 8A Neighboring gene G protein-coupled receptor 37 like 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein kinase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein tyrosine phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-tyrosine dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tyrosine-protein phosphatase non-receptor type 7

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034190915.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCavPor4.1

Genomic

  1. NW_026947512.1 Reference mCavPor4.1

    Range
    22088579..22105472
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063240075.1 → XP_063096145.1  tyrosine-protein phosphatase non-receptor type 7 isoform X1

  2. XM_063240077.1 → XP_063096147.1  tyrosine-protein phosphatase non-receptor type 7 isoform X2

  3. XM_063240074.1 → XP_063096144.1  tyrosine-protein phosphatase non-receptor type 7 isoform X1

  4. XM_063240078.1 → XP_063096148.1  tyrosine-protein phosphatase non-receptor type 7 isoform X5

  5. XM_023567201.2 → XP_023422969.1  tyrosine-protein phosphatase non-receptor type 7 isoform X4

    Conserved Domains (1) summary
    cd00047
    Location:121 → 347
    PTPc; Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr ...

  6. XM_013158129.3 → XP_013013583.1  tyrosine-protein phosphatase non-receptor type 7 isoform X3

    UniProtKB/TrEMBL
    H0UZX2
    Related
    ENSCPOP00000002748.2
    Conserved Domains (2) summary
    smart00194
    Location:96 → 348
    PTPc; Protein tyrosine phosphatase, catalytic domain
    cd00047
    Location:122 → 348
    PTPc; Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr ...

  7. XM_063240076.1 → XP_063096146.1  tyrosine-protein phosphatase non-receptor type 7 isoform X1

  8. XM_063240079.1 → XP_063096149.1  tyrosine-protein phosphatase non-receptor type 7 isoform X6

Nucleotide Protein
Heading Accession and Version

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