Eefsec eukaryotic elongation factor, selenocysteine-tRNA specific [Cavia porcellus (domestic guinea pig)] - Gene

Summary

Gene symbol: Eefsec
Gene description: eukaryotic elongation factor, selenocysteine-tRNA specific
See related: Ensembl:ENSCPOG00000024352
Gene type: protein coding
RefSeq status: MODEL
Organism: Cavia porcellus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
Orthologs: human mouse all
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Genomic context

Location:: chromosome: Un

Exon count:: 9

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	mCavPor4.1 (GCF_034190915.1)	Unplaced Scaffold	NW_026947510.1 (7370863..7578583)
103	previous assembly	Cavpor3.0 (GCF_000151735.1)	Unplaced Scaffold	NT_176232.1 (742025..949758)

NW_026947510.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables GTP binding	IEA Inferred from Electronic Annotation more info	PubMed
enables GTPase activity	IEA Inferred from Electronic Annotation more info	PubMed
enables translation elongation factor activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in selenocysteine incorporation	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: selenocysteine-specific elongation factor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034190915.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCavPor4.1

Genomic

NW_026947510.1 Reference mCavPor4.1

Range

7370863..7578583

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_063237808.1 → XP_063093878.1 selenocysteine-specific elongation factor isoform X6
XM_063237806.1 → XP_063093876.1 selenocysteine-specific elongation factor isoform X3
XM_063237805.1 → XP_063093875.1 selenocysteine-specific elongation factor isoform X1
XM_003461490.5 → XP_003461538.1 selenocysteine-specific elongation factor isoform X2

UniProtKB/TrEMBL

H0W1S3

Related

ENSCPOP00000016913.1

Conserved Domains (4) summary

cd01889
Location:8 → 194

SelB_euk; SelB, the dedicated elongation factor for delivery of selenocysteinyl-tRNA to the ribosome

pfam00009
Location:8 → 194

GTP_EFTU; Elongation factor Tu GTP binding domain

cd03696
Location:209 → 291

SelB_II; Domain II of elongation factor SelB

cd04094
Location:296 → 435

eSelB_III; Domain III of eukaryotic and archaeal elongation factor SelB
XM_063237810.1 → XP_063093880.1 selenocysteine-specific elongation factor isoform X7
XM_004999649.4 → XP_004999706.1 selenocysteine-specific elongation factor isoform X5

Conserved Domains (4) summary

cd01889
Location:8 → 195

SelB_euk; SelB, the dedicated elongation factor for delivery of selenocysteinyl-tRNA to the ribosome

pfam00009
Location:8 → 194

GTP_EFTU; Elongation factor Tu GTP binding domain

cd04094
Location:241 → 380

eSelB_III; Domain III of eukaryotic and archaeal elongation factor SelB

cl02787
Location:191 → 236

Translation_Factor_II_like; Domain II of Elongation factor Tu (EF-Tu)-like proteins
XM_063237807.1 → XP_063093877.1 selenocysteine-specific elongation factor isoform X4