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Ddx43 DEAD-box helicase 43 [ Cavia porcellus (domestic guinea pig) ]

Gene ID: 100720096, updated on 3-Apr-2024

Summary

Gene symbol
Ddx43
Gene description
DEAD-box helicase 43
See related
Ensembl:ENSCPOG00000003991
Gene type
protein coding
RefSeq status
MODEL
Organism
Cavia porcellus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
Orthologs
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Genomic context

See Ddx43 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2024_02 current mCavPor4.1 (GCF_034190915.1) Unplaced Scaffold NW_026947499.1 (57802822..57833991)
103 previous assembly Cavpor3.0 (GCF_000151735.1) Unplaced Scaffold NT_176415.1 (46539070..46569934)

NW_026947499.1Genomic Context describing neighboring genes Neighboring gene C2 calcium dependent domain containing 6 Neighboring gene ubiquitin-protein ligase E3C-like Neighboring gene cell division cycle 5-like protein Neighboring gene cyclic GMP-AMP synthase Neighboring gene mitochondrial tRNA translation optimization 1

Genomic regions, transcripts, and products

General protein information

Preferred Names
probable ATP-dependent RNA helicase DDX43

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034190915.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCavPor4.1

Genomic

  1. NW_026947499.1 Reference mCavPor4.1

    Range
    57802822..57833991
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003477899.4XP_003477947.1  probable ATP-dependent RNA helicase DDX43 isoform X1

    UniProtKB/TrEMBL
    H0V254
    Related
    ENSCPOP00000003602.3
    Conserved Domains (4) summary
    PTZ00424
    Location:244621
    PTZ00424; helicase 45; Provisional
    cd00079
    Location:462589
    HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
    cd00105
    Location:72128
    KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
    cd00268
    Location:250447
    DEADc; DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif ...
  2. XM_063226889.1XP_063082959.1  probable ATP-dependent RNA helicase DDX43 isoform X1

    UniProtKB/TrEMBL
    H0V254
  3. XM_063226890.1XP_063082960.1  probable ATP-dependent RNA helicase DDX43 isoform X2